DNADynamo: Difference between revisions
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| latest preview date = |
| latest preview date = |
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| operating system = Mac OS X, Windows, Linux |
| operating system = Mac OS X, Windows, Linux |
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| platform = [[Java]] |
| platform = [[Java (programming language)|Java]] |
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| genre = [[Bioinformatics]] |
| genre = [[Bioinformatics]] |
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| license = commercial |
| license = commercial |
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== Features == |
== Features == |
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DNADynamo is a general purpose DNA and Protein sequence analysis package that can carry out most of the functions required by a standard research molecular biology laboratory |
DNADynamo is a general purpose DNA and Protein sequence analysis package that can carry out most of the functions required by a standard research molecular biology laboratory |
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* DNA and Protein Sequence viewing, editing and annotating |
* DNA and Protein Sequence viewing, editing and annotating |
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* [[Restriction site]] analysis - for viewing restriction cut sites in tables and on linear and circular maps. |
* [[Restriction site]] analysis - for viewing restriction cut sites in tables and on linear and circular maps. |
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* A [[Subcloning]] tool for the assembly of constructs using Restriction Sites or [[Gibson assembly]], |
* A [[Subcloning]] tool for the assembly of constructs using Restriction Sites or [[Gibson assembly]], |
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* [[ |
* [[Agarose gel electrophoresis|Agarose Gel]] simulation. |
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* Online Database searching - Search public databases at the NCBI such as [[Genbank]] and [[UniProt]]. |
* Online Database searching - Search public databases at the NCBI such as [[Genbank]] and [[UniProt]]. |
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* Online [[BLAST]] searches. |
* Online [[BLAST]] searches. |
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* [[PCR]] Primer design, including an interface to Primer3 |
* [[PCR]] Primer design, including an interface to Primer3 |
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* 3D structure viewing via an interface to [[Jmol]] |
* 3D structure viewing via an interface to [[Jmol]] |
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== History == |
== History == |
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Revision as of 03:37, 20 August 2017
| Developer(s) | BlueTractorSoftware Ltd |
|---|---|
| Operating system | Mac OS X, Windows, Linux |
| Platform | Java |
| Typ | Bioinformatics |
| License | commercial |
| Website | bluetractorsoftware.co.uk |
DNADynamo is a commercial DNA sequence analysis software package produced by Blue Tractor Software Ltd [1] that runs on Microsoft Windows, Mac OS X and Linux [2] It is used by molecular biologists [3] to analyze DNA and Protein sequences. A free demo is available from the software developers website.
Eigenschaften
DNADynamo is a general purpose DNA and Protein sequence analysis package that can carry out most of the functions required by a standard research molecular biology laboratory
- DNA and Protein Sequence viewing, editing and annotating
- Contig assembly and chromatogram editing including comparison to a reference sequence to identify mutations
- Global Sequence alignment with ClustalW and MUSCLE and editing.
- Select and drag Sequence alignment editing for hand made dna vs protein alignments
- Restriction site analysis - for viewing restriction cut sites in tables and on linear and circular maps.
- A Subcloning tool for the assembly of constructs using Restriction Sites or Gibson assembly,
- Agarose Gel simulation.
- Online Database searching - Search public databases at the NCBI such as Genbank and UniProt.
- Online BLAST searches.
- Protein analysis including estimation of Molecular Weight, Extinction Coefficient and pI.
- PCR Primer design, including an interface to Primer3
- 3D structure viewing via an interface to Jmol
History
DNADynamo has been developed since 2004 by BlueTractorSoftware Ltd, a software development company based in North Wales, UK [4]