HERV-IP-T47D, a novel type C-related human endogenous retroviral sequence derived from T47D particles

AIDS Res Hum Retroviruses. 2000 Mar 20;16(5):471-80. doi: 10.1089/088922200309133.

Abstract

A new type C retrovirus-related endogenous pol sequence (ERV-FTD) found to be occasionally copackaged in retrovirus-like particles released by the human mammary carcinoma cell line T47D was used to screen a human genomic library (Seifarth W, Skladny H, Krieg-Schneider F, Reichert A, Hehlmann R, and Leib-Mösch C: J Virol 1995;69:6408-6416). The DNA sequence of one full-length clone now reveals a human endogenous proviral sequence (HERV) of 4190 bp in length comprising a 5' LTR (489 bp) and regions with 37 and 74% overall amino acid homology to RTVL-Ia gag and pol genes, respectively. About 35 related elements were found to be distributed on all human chromosomes except 16, 17, and Y. Sequence comparisons with Mo-MuLV and various type C-related HERVs suggest that despite a proline primer-binding site this novel HERV element, now named HERV-IP-T47D, can be assigned to one family together with known HERV-I elements. Phylogenetic analyses of 5 proviral and 25 solitary LTR sequences confirmed the existence of two distinct but closely related subgroups of the HERV-IP superfamily in the primate genome. In contrast to most known HERV-families, the evolutionary age of HERV-IP elements dates back prior to the divergence of New and Old World monkeys. Despite their old age, members of the HERV-IP family are still transcriptionally active and were found to be highly expressed in specific human tissues such as liver and kidney.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Blotting, Southern
  • Cebidae
  • Cercopithecidae
  • Chromosome Mapping
  • DNA Probes / genetics
  • DNA, Viral / genetics
  • Endogenous Retroviruses / enzymology
  • Endogenous Retroviruses / genetics*
  • Endogenous Retroviruses / metabolism
  • Genes, gag
  • Genes, pol
  • HeLa Cells
  • Humans
  • Molecular Sequence Data
  • Phylogeny
  • Polymerase Chain Reaction
  • Proviruses / genetics*
  • RNA-Directed DNA Polymerase / genetics
  • Sequence Alignment
  • Sequence Homology
  • Terminal Repeat Sequences
  • Tumor Cells, Cultured

Substances

  • DNA Probes
  • DNA, Viral
  • RNA-Directed DNA Polymerase

Associated data

  • GENBANK/AF087913