Inferring gene networks from time series microarray data using dynamic Bayesian networks

Brief Bioinform. 2003 Sep;4(3):228-35. doi: 10.1093/bib/4.3.228.

Abstract

Dynamic Bayesian networks (DBNs) are considered as a promising model for inferring gene networks from time series microarray data. DBNs have overtaken Bayesian networks (BNs) as DBNs can construct cyclic regulations using time delay information. In this paper, a general framework for DBN modelling is outlined. Both discrete and continuous DBN models are constructed systematically and criteria for learning network structures are introduced from a Bayesian statistical viewpoint. This paper reviews the applications of DBNs over the past years. Real data applications for Saccharomyces cerevisiae time series gene expression data are also shown.

MeSH terms

  • Algorithms
  • Bayes Theorem*
  • Computational Biology / methods
  • Computer Simulation
  • Gene Expression Profiling
  • Gene Expression Regulation, Fungal
  • Mathematics
  • Models, Genetic*
  • Oligonucleotide Array Sequence Analysis*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Time Factors