The high-affinity peptidoglycan binding domain of Pseudomonas phage endolysin KZ144

Biochem Biophys Res Commun. 2009 May 29;383(2):187-91. doi: 10.1016/j.bbrc.2009.03.161. Epub 2009 Apr 5.

Abstract

The binding affinity of the N-terminal peptidoglycan binding domain of endolysin KZ144 (PBD(KZ)), originating from Pseudomonas aeruginosa bacteriophage varphiKZ, has been examined using a fusion protein of PBD(KZ) and green fluorescent protein (PBD(KZ)-GFP). A fluorescence recovery after photobleaching analysis of bound PBD(KZ)-GFP molecules showed less than 10% fluorescence recovery in the bleached area within 15 min. Surface plasmon resonance analysis confirmed this apparent high binding affinity revealing an equilibrium affinity constant of 2.95 x 10(7)M(-1) for the PBD(KZ)-peptidoglycan interaction. This unique domain, which binds to the peptidoglycan of all tested Gram-negative species, was harnessed to improve the specific activity of the peptidoglycan hydrolase domain KMV36C. The chimeric peptidoglycan hydrolase (PBD(KZ)-KMV36C) exhibits a threefold higher specific activity than the native catalytic domain (KMV36C). These results demonstrate that the modular assembly of functional domains is a rational approach to improve the specific activity of endolysins from phages infecting Gram-negatives.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalytic Domain
  • Endopeptidases / chemistry
  • Endopeptidases / genetics
  • Endopeptidases / metabolism*
  • Green Fluorescent Proteins / chemistry
  • Green Fluorescent Proteins / genetics
  • Kinetics
  • Peptidoglycan / metabolism*
  • Protein Binding
  • Protein Structure, Tertiary
  • Pseudomonas Phages / enzymology*
  • Pseudomonas aeruginosa / virology*
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism

Substances

  • Peptidoglycan
  • Recombinant Fusion Proteins
  • Green Fluorescent Proteins
  • Endopeptidases
  • endolysin