Protein function prediction: towards integration of similarity metrics

Curr Opin Struct Biol. 2011 Apr;21(2):180-8. doi: 10.1016/j.sbi.2011.02.001. Epub 2011 Feb 24.

Abstract

Genomic centers discover increasingly many protein sequences and structures, but not necessarily their full biological functions. Thus, currently, less than one percent of proteins have experimentally verified biochemical activities. To fill this gap, function prediction algorithms apply metrics of similarity between proteins on the premise that those sufficiently alike in sequence, or structure, will perform identical functions. Although high sensitivity is elusive, network analyses that integrate these metrics together hold the promise of rapid gains in function prediction specificity.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Computer Simulation*
  • Databases, Protein
  • Molecular Sequence Annotation / methods
  • Proteins / chemistry*
  • Proteins / metabolism*
  • Software

Substances

  • Proteins