Genome-wide association study of circulating vitamin D-binding protein

Am J Clin Nutr. 2014 Jun;99(6):1424-31. doi: 10.3945/ajcn.113.080309. Epub 2014 Apr 16.

Abstract

Background: Vitamin D status may influence a spectrum of health outcomes, including osteoporosis, arthritis, cardiovascular disease, and cancer. Vitamin D-binding protein (DBP) is the primary carrier of vitamin D in the circulation and regulates the bioavailability of 25-hydroxyvitamin D. Epidemiologic studies have shown direct DBP-risk relations and modification by DBP of vitamin D-disease associations.

Objective: We aimed to characterize common genetic variants that influence the DBP biochemical phenotype.

Design: We conducted a genome-wide association study (GWAS) of 1380 men through linear regression of single-nucleotide polymorphisms (SNPs) in the Illumina HumanHap500/550/610 array on fasting serum DBP, assuming an additive genetic model, with adjustment for age at blood collection.

Results: We identified 2 independent SNPs located in the gene encoding DBP, GC, that were highly associated with serum DBP: rs7041 (P = 1.42 × 10⁻²⁴⁶) and rs705117 (P = 4.7 × 10⁻⁹¹). For both SNPs, mean serum DBP decreased with increasing copies of the minor allele: mean DBP concentrations (nmol/L) were 7335, 5149, and 3152 for 0, 1, and 2 copies of rs7041 (T), respectively, and 6339, 4280, and 2341, respectively, for rs705117 (G). DBP was also associated with rs12144344 (P = 5.9 × 10⁻⁷) in ST6GALNAC3.

Conclusions: In this GWAS analysis, to our knowledge the first to examine this biochemical phenotype, 2 variants in GC--one exonic and one intronic--were associated with serum DBP concentrations at the genome-wide level of significance. Understanding the genetic contributions to circulating DBP may provide greater insights into the vitamin D binding, transport, and other functions of DBP and the effect of vitamin D status on health outcomes.

Trial registration: ClinicalTrials.gov NCT00342992.

Publication types

  • Randomized Controlled Trial
  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural

MeSH terms

  • 25-Hydroxyvitamin D 2 / blood
  • 25-Hydroxyvitamin D 2 / metabolism
  • Aged
  • Alleles
  • Calcifediol / blood
  • Calcifediol / metabolism
  • Case-Control Studies
  • Cohort Studies
  • Exons
  • Finnland
  • Gene Frequency
  • Genome-Wide Association Study
  • Humans
  • Introns
  • Linear Models
  • Linkage Disequilibrium
  • Male
  • Middle Aged
  • N-Acetylgalactosaminyltransferases / genetics*
  • N-Acetylgalactosaminyltransferases / metabolism
  • Polymorphism, Single Nucleotide*
  • Polypeptide N-acetylgalactosaminyltransferase
  • Sialyltransferases / genetics*
  • Sialyltransferases / metabolism
  • Vitamin D-Binding Protein / blood*
  • Vitamin D-Binding Protein / genetics*
  • Vitamin D-Binding Protein / metabolism

Substances

  • Vitamin D-Binding Protein
  • 25-Hydroxyvitamin D 2
  • N-Acetylgalactosaminyltransferases
  • Neu5Ac N-acetylgalactosamine 2,6-sialyltransferase
  • Sialyltransferases
  • Calcifediol

Associated data

  • ClinicalTrials.gov/NCT00342992