Identification of conserved and HLA-A*2402-restricted epitopes in Dengue virus serotype 2

Virus Res. 2015 Jan 22:196:5-12. doi: 10.1016/j.virusres.2014.10.022. Epub 2014 Nov 1.

Abstract

In this study, we set out to identify dengue virus serotype 2 (DENV-2)-specific HLA-A*2402-restricted epitopes and determine the characteristics of T cells generated to these epitopes. We screened the full-length amino-acid sequence of DENV-2 to find potential epitopes using the SYFPEITHI algorithm. Twelve putative HLA-A*2402-binding peptides conserved in hundreds of DENV-2 strains were synthesized, and the HLA restriction of peptides was tested in HLA-A*2402 transgenic mice. Nine peptides (NS4b(228-237), NS2a(73-81), E(298-306), M(141-149), NS4a(96-105), NS4b(159-168), NS5(475-484), NS1(162-171), and NS5(611-620)) induced high levels of peptide-specific IFN-γ-secreting cells in HLA-A*2402 transgenic mice. Apart from IFN-γ, NS4b(228-237-), NS2a(73-81-) and E(298-306)-specific CD8(+) cells produced TNF-α and IL-6 simultaneously, whereas M(141-149-) and NS5(475-484-) CD8(+) cells produced only IL-6. Moreover, splenic mononuclear cells (SMCs) efficiently recognized and killed peptide-pulsed splenocytes. Furthermore, each of nine peptides could be recognized by splenocytes from DENV-2-infected HLA-A*2402 transgenic mice. The SMCs from HLA-A*2402 transgenic mice immunized with nine immunogenic peptides efficiently killed DENV-2-infected splenic monocytes. The present identified epitopes have the potential to be new diagnostic tools for characterization of T-cell immunity in DENV infection and may serve as part of a universal epitope-based vaccine.

Keywords: Dengue virus; Epitope; HLA-A*2402.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Cell Line
  • Cytokines / metabolism
  • Dengue / immunology*
  • Dengue / metabolism
  • Dengue Virus / classification
  • Dengue Virus / immunology*
  • Disease Models, Animal
  • Epitope Mapping
  • Epitopes / chemistry
  • Epitopes / immunology*
  • Epitopes, T-Lymphocyte / chemistry
  • Epitopes, T-Lymphocyte / immunology
  • Female
  • HLA-A Antigens / immunology*
  • Humans
  • Immunization
  • Immunophenotyping
  • Mice, Transgenic
  • Peptides / chemistry
  • Peptides / immunology
  • Serogroup
  • T-Lymphocytes, Cytotoxic / immunology
  • T-Lymphocytes, Cytotoxic / metabolism

Substances

  • Cytokines
  • Epitopes
  • Epitopes, T-Lymphocyte
  • HLA-A Antigens
  • Peptides