ORF7 from Amycolatopsis orientalis catalyzes decarboxylation of Nδ-methylarginine and amine oxidation of arginine: Biosynthetic implications

Biochim Biophys Acta Proteins Proteom. 2017 Jan;1865(1):99-106. doi: 10.1016/j.bbapap.2016.09.018. Epub 2016 Sep 29.

Abstract

A key step in the biosynthesis of the polyene polyketide ECO-0501 by Amycolatopsis orientalis ATCC 43491 is thought to involve oxidative decarboxylation of arginine or Nδ-methylarginine to the corresponding primary amide. This reaction is the centerpiece of a recently identified biosynthetic cassette that generates 4-guanidinobutyryl thioesters to serve as starter units for polyketide synthesis. We examined the reaction of ORF7, the predicted ECO-0501 biosynthetic decarboxylase, with arginine, and saw no evidence of decarboxylation. Instead, we observed exclusive amine oxidation to generate 2-oxoarginine, with a kcat/KM,Arg of 5.6×106M-1s-1, typical of values measured for physiological amino acid decarboxylases. In contrast, when ORF7 was incubated with Nδ-methylarginine, we observed exclusive decarboxylation to generate 4-(N1-methylguanidino)butyramide. These differing reactive pathways provide insight into the biosyntheses of guanidinobutyryl-derived polyketides and demonstrate the biosynthetic versatility of arginine-processing decarboxylases. In addition, it suggests that ORF7 may be an incisive model system for dissecting the determinants of flavoprotein-catalyzed oxidase and monooxygenase modes of reactivity.

Keywords: Biosynthesis; Flavoenzyme; Monoxygenase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinobacteria / enzymology*
  • Amides / metabolism
  • Arginine / metabolism
  • Bacterial Proteins / metabolism*
  • Biocatalysis
  • Carboxy-Lyases / metabolism*
  • Decarboxylation
  • Fatty Acids, Unsaturated / biosynthesis*
  • Guanidines
  • Models, Molecular
  • Oxidation-Reduction
  • omega-N-Methylarginine / metabolism

Substances

  • 13-hydroxy-2,12,14,16,22-pentamethyl-28-(N-methyl-guanidino)-octacosa-2,4,6,8,10,14,20,24-octaenoic acid (2-hydroxy-5-oxo-cyclopent-1-enyl)-amide
  • Amides
  • Bacterial Proteins
  • Fatty Acids, Unsaturated
  • Guanidines
  • omega-N-Methylarginine
  • Arginine
  • Carboxy-Lyases