Human Lung Tissue Transcriptome: Influence of Sex and Age

PLoS One. 2016 Nov 30;11(11):e0167460. doi: 10.1371/journal.pone.0167460. eCollection 2016.

Abstract

Background: Sex and age strongly influence the pathophysiology of human lungs, but scarce information is available about their effects on pulmonary gene expression.

Methods: We followed a discovery-validation strategy to identify sex- and age-related transcriptional differences in lung.

Results: We identified transcriptional profiles significantly associated with sex (215 genes; FDR < 0.05) and age at surgery (217 genes) in non-involved lung tissue resected from 284 lung adenocarcinoma patients. When these profiles were tested in three independent series of non-tumor lung tissue from an additional 1,111 patients, we validated the association with sex and age for 25 and 22 genes, respectively. Among the 17 sex-biased genes mapping on chromosome X, 16 have been reported to escape X-chromosome inactivation in other tissues or cells, suggesting that this mechanism influences lung transcription too. Our 22 age-related genes partially overlap with genes modulated by age in other tissues, suggesting that the aging process has similar consequences on gene expression in different organs. Finally, seven genes whose expression was modulated by sex in non-tumor lung tissue, but no age-related gene, were also validated using publicly available data from 990 lung adenocarcinoma samples, suggesting that the physiological regulatory mechanisms are only partially active in neoplastic tissue.

Conclusions: Gene expression in non-tumor lung tissue is modulated by both sex and age. These findings represent a validated starting point for research on the molecular mechanisms underlying the observed differences in the course of lung diseases among men and women of different ages.

MeSH terms

  • Aging / genetics*
  • Female
  • Humans
  • Lung / metabolism*
  • Male
  • Middle Aged
  • Sex Characteristics*
  • Transcription, Genetic
  • Transcriptome*

Grants and funding

This work was supported by grants from the Italian Association for Cancer Research (AIRC, grant no. 14714). One of the authors (D.N.) has an affiliation to a commercial funder of this research (Merck & Co. Inc.); the funder provided support in the form of salary for the author (D.N.), but did not have any additional role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript. The specific roles of this author are articulated in the ‘author contributions’ section. The funders had no role in the design or conduction of the study, in the collection, analysis or interpretation of the data, or in the preparation, review and approval of the manuscript. The collection of lung samples from Laval University was supported by the Chaire de pneumologie de la Fondation JD Bégin de l’Université Laval, the Fondation de l’Institut universitaire de cardiologie et de pneumologie de Québec, the Respiratory Health Network of the FRQS, the Canadian Institutes of Health Research (MOP – 123369), and the Cancer Research Society and Read for the Cure. Y. Bossé is the recipient of a Junior 2 Research Scholar award from the Fonds de recherche Québec – Santé (FRQS). The authors would like to thank the staff at the Respiratory Health Network Tissue Bank of the FRQS for their valuable assistance.