DNA-Mediated Proximity-Based Assembly Circuit for Actuation of Biochemical Reactions

Angew Chem Int Ed Engl. 2018 Oct 1;57(40):13086-13090. doi: 10.1002/anie.201806749. Epub 2018 Sep 10.

Abstract

Smart nanodevices that integrate molecular recognition and signal production hold great promise for the point-of-care (POC) diagnostic applications. Herein, the development of a DNA-mediated proximity assembly of biochemical reactions, which was capable of sensing various bio-targets and reporting easy-to-read signals is reported. The circuit was composed of a DNA hairpin-locked catalytic cofactor with inhibited activity. Specific molecular inputs can trigger a conformational switch of the DNA locks through the mechanisms of toehold displacement and aptamer switching, exposing an active cofactor. The subsequent assembly of an enzyme/cofactor pair actuated a reaction to produce colorimetric or fluorescence signals for detecting target molecules. The developed system could be potentially applied to smart biosensing in molecular diagnostics and POC tests.

Keywords: DNA assembly; DNA nanotechnology; biosensors; enzyme actuation; logic gates.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Aptamers, Nucleotide / chemistry
  • Biosensing Techniques
  • Colorimetry*
  • DNA / analysis*
  • DNA / chemistry
  • Glucosephosphate Dehydrogenase / metabolism
  • Inverted Repeat Sequences
  • NAD / chemistry
  • NAD / metabolism
  • Nanostructures / chemistry
  • Point-of-Care Systems

Substances

  • Aptamers, Nucleotide
  • NAD
  • DNA
  • Glucosephosphate Dehydrogenase