Macrophage Phosphoproteome Analysis Reveals MINCLE-dependent and -independent Mycobacterial Cord Factor Signaling

Mol Cell Proteomics. 2019 Apr;18(4):669-685. doi: 10.1074/mcp.RA118.000929. Epub 2019 Jan 11.

Abstract

Immune sensing of Mycobacterium tuberculosis relies on recognition by macrophages. Mycobacterial cord factor, trehalose-6,6'-dimycolate (TDM), is the most abundant cell wall glycolipid and binds to the C-type lectin receptor (CLR) MINCLE. To explore the kinase signaling linking the TDM-MINCLE interaction to gene expression, we employed quantitative phosphoproteome analysis. TDM caused upregulation of 6.7% and suppressed 3.8% of the 14,000 phospho-sites identified on 3727 proteins. MINCLE-dependent phosphorylation was observed for canonical players of CLR signaling (e.g. PLCγ, PKCδ), and was enriched for PKCδ and GSK3 kinase motifs. MINCLE-dependent activation of the PI3K-AKT-GSK3 pathway contributed to inflammatory gene expression and required the PI3K regulatory subunit p85α. Unexpectedly, a substantial fraction of TDM-induced phosphorylation was MINCLE-independent, a finding paralleled by transcriptome data. Bioinformatics analysis of both data sets concurred in the requirement for MINCLE for innate immune response pathways and processes. In contrast, MINCLE-independent phosphorylation and transcriptome responses were linked to cell cycle regulation. Collectively, our global analyses show substantial reprogramming of macrophages by TDM and reveal a dichotomy of MINCLE-dependent and -independent signaling linked to distinct biological responses.

Keywords: C-type lectin receptor; Kinases*; Mincle; Phosphoproteome; RNA SEQ; Signal Transduction*; Tuberculosis; macrophage; mycobacteria; trehalose-6, 6-diymcolate.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Cycle / genetics
  • Cell Proliferation / genetics
  • Cell Survival / genetics
  • Cord Factors / metabolism*
  • Cord Factors / pharmacology
  • Cytokines / metabolism
  • Enzyme Activation / drug effects
  • Gene Expression Regulation / drug effects
  • Glycolipids / metabolism
  • Kinetics
  • Lectins, C-Type / metabolism*
  • Macrophage Activation / drug effects
  • Macrophage Activation / genetics
  • Macrophages / drug effects
  • Macrophages / metabolism*
  • Membrane Proteins / metabolism*
  • Mice, Inbred C57BL
  • Mitogen-Activated Protein Kinases / metabolism
  • Mycobacterium tuberculosis / metabolism
  • Phosphatidylinositol 3-Kinases / metabolism
  • Phosphoproteins / metabolism*
  • Phosphorylation / drug effects
  • Proteome / metabolism*
  • Proteomics*
  • Proto-Oncogene Proteins c-akt / metabolism
  • Signal Transduction* / drug effects
  • Syk Kinase / metabolism
  • Transcriptome / genetics
  • Trehalose / metabolism

Substances

  • Clecsf8 protein, mouse
  • Cord Factors
  • Cytokines
  • Glycolipids
  • Lectins, C-Type
  • Membrane Proteins
  • Phosphoproteins
  • Proteome
  • Trehalose
  • Syk Kinase
  • Proto-Oncogene Proteins c-akt
  • Mitogen-Activated Protein Kinases