In the biotechnological desulfurization process under haloalkaline conditions, dihydrogen sulfide (H2S) is removed from sour gas and oxidized to elemental sulfur (S8) by sulfide-oxidizing bacteria. Besides S8, the byproducts sulfate (SO42-) and thiosulfate (S2O32-) are formed, which consume caustic and form a waste stream. The aim of this study was to increase selectivity toward S8 by a new process line-up for biological gas desulfurization, applying two bioreactors with different substrate conditions (i.e., sulfidic and microaerophilic), instead of one (i.e., microaerophilic). A 111-day continuous test, mimicking full scale operation, demonstrated that S8 formation was 96.6% on a molar H2S supply basis; selectivity for SO42- and S2O32- were 1.4 and 2.0% respectively. The selectivity for S8 formation in a control experiment with the conventional 1-bioreactor line-up was 75.6 mol %. At start-up, the new process line-up immediately achieved lower SO42- and S2O32- formations compared to the 1-bioreactor line-up. When the microbial community adapted over time, it was observed that SO42- formation further decreased. In addition, chemical formation of S2O32- was reduced due to biologically mediated removal of sulfide from the process solution in the anaerobic bioreactor. The increased selectivity for S8 formation will result in 90% reduction in caustic consumption and waste stream formation compared to the 1-bioreactor line-up.