Barcoding Technology for Multiplexed Analysis of Metastatic Ability In Vivo

Methods Mol Biol. 2021:2294:239-251. doi: 10.1007/978-1-0716-1350-4_17.

Abstract

DNA barcoding allows the quantitative, biomarker-free tracking of individual cell populations in mixed/heterogeneous cell pools. Here, we describe a multiplexed in vivo screening platform based on DNA barcoding technology to interrogate compound libraries for their effect on metastatic seeding in vivo. We apply next-generation sequencing (NGS) technology to quantitatively analyze high-throughput compound screening in mice. Up to 96 compounds and controls can be screened for their effect on metastatic ability in a single mouse.

Keywords: Chemical compound screens; DNA barcoding; In vivo screening; Metastasis; Mouse transplantation models; Next-generation sequencing; Retroviral vector transduction.

MeSH terms

  • Animals
  • Cell Line, Tumor
  • Drug Screening Assays, Antitumor / methods*
  • HEK293 Cells
  • High-Throughput Screening Assays / methods*
  • Humans
  • Mice
  • Multiplex Polymerase Chain Reaction / methods*
  • Neoplasm Metastasis
  • Neoplasms / drug therapy
  • Neoplasms / genetics*
  • Neoplasms / pathology
  • RNA-Seq / methods*