Identification of Differentially Expressed Circular RNAs as miRNA Sponges in Lung Adenocarcinoma

Yuechao Liu; Xin Wang; Lulu Bi; Hongbo Huo; Shi Yan; Yimeng Cui; Yaowen Cui; Ruixue Gu; Dexin Jia; Shuai Zhang; Li Cai; Xiaomei Li; Ying Xing

doi:10.1155/2021/5193913

Identification of Differentially Expressed Circular RNAs as miRNA Sponges in Lung Adenocarcinoma

J Oncol. 2021 Sep 10:2021:5193913. doi: 10.1155/2021/5193913. eCollection 2021.

Authors

Yuechao Liu¹, Xin Wang¹, Lulu Bi¹, Hongbo Huo¹, Shi Yan¹, Yimeng Cui¹, Yaowen Cui¹, Ruixue Gu¹, Dexin Jia¹, Shuai Zhang¹, Li Cai¹, Xiaomei Li², Ying Xing¹

Affiliations

¹ The Fourth Department of Medical Oncology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin 150040, China.
² Department of Pathology, Harbin Medical University Cancer Hospital, 150 Haping Road, Harbin 150040, China.

Abstract

Background: Circular RNAs (circRNAs) may function as the decoys for microRNAs (miRNAs) or proteins, the templates for translation, and the sources of pseudogene generation. The purpose of this study is to determine the diagnostic circRNAs, which are related to lung adenocarcinoma (LUAD), that adsorb miRNAs on the basis of the competing endogenous RNA (ceRNA) hypothesis.

Methods: The differentially expressed circRNAs (DEcircRNAs) in LUAD were revealed by the microarray data (GSE101586 and GSE101684) that were obtained from the Gene Expression Omnibus (GEO) database. The miRNAs that were targeted by the DEcircRNAs were predicted with the CircInteractome, and the target mRNAs of the miRNAs were found by the miRDB and the TargetScan. The ceRNA network was built by the Cytoscape. The potential biological roles and the regulatory mechanisms of the circRNAs were investigated by the Gene Ontology (GO) enrichment analysis and the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. The expression of the host genes of circRNAs was examined by the Ualcan. The survival analysis was performed by the Kaplan-Meier plotter.

Results: In comparison with normal lung tissues, LUAD tissues contained 7 overlapping cancer-specific DEcircRNAs with 294 miRNA response elements (MREs). Among the 7 DEcircRNAs, 3 circRNAs (hsa_circ_0072088, hsa_circ_0003528, and hsa_circ_0008274) were upregulated and 4 circRNAs (hsa_circ_0003162, hsa_circ_0029426, hsa_circ_0049271, and hsa_circ_0043256) were downregulated. A circRNA-miRNA-mRNA regulatory network, which included 33 differentially expressed miRNAs (DEmiRNAs) and 2007 differentially expressed mRNAs (DEmRNAs), was constructed. These mRNAs were enriched in the biological function of cell-cell adhesion, response to hypoxia, and stem cell differentiation and were involved in the PI3K-Akt signaling, HIF-1 signaling, and cAMP signaling pathways.

Conclusion: Our results indicated that 7 DEcircRNAs could have diagnostic value for LUAD. Additionally, the circRNAs-mediated ceRNA network might provide a novel perspective into unraveling the pathogenesis and progression of LUAD.