Infrared molecular fingerprinting of blood-based liquid biopsies for the detection of cancer

Elife. 2021 Oct 26:10:e68758. doi: 10.7554/eLife.68758.

Abstract

Recent omics analyses of human biofluids provide opportunities to probe selected species of biomolecules for disease diagnostics. Fourier-transform infrared (FTIR) spectroscopy investigates the full repertoire of molecular species within a sample at once. Here, we present a multi-institutional study in which we analysed infrared fingerprints of plasma and serum samples from 1639 individuals with different solid tumours and carefully matched symptomatic and non-symptomatic reference individuals. Focusing on breast, bladder, prostate, and lung cancer, we find that infrared molecular fingerprinting is capable of detecting cancer: training a support vector machine algorithm allowed us to obtain binary classification performance in the range of 0.78-0.89 (area under the receiver operating characteristic curve [AUC]), with a clear correlation between AUC and tumour load. Intriguingly, we find that the spectral signatures differ between different cancer types. This study lays the foundation for high-throughput onco-IR-phenotyping of four common cancers, providing a cost-effective, complementary analytical tool for disease recognition.

Keywords: cancer detection; human; infrared spectroscopy; liquid biopsy; medicine; phenotyping.

MeSH terms

  • Breast Neoplasms / diagnosis*
  • Female
  • Humans
  • Liquid Biopsy / methods*
  • Lung Neoplasms / diagnosis*
  • Maschinelles Lernen
  • Male
  • Prostatic Neoplasms / diagnosis*
  • Spectroscopy, Fourier Transform Infrared / methods*
  • Urinary Bladder Neoplasms / diagnosis*

Associated data

  • DRKS/DRKS00013217

Grants and funding

No external funding was received for this work.