Phytochrome-Interacting Proteins

Biomolecules. 2023 Dec 21;14(1):9. doi: 10.3390/biom14010009.

Abstract

Phytochromes are photoreceptors of plants, fungi, slime molds bacteria and heterokonts. These biliproteins sense red and far-red light and undergo light-induced changes between the two spectral forms, Pr and Pfr. Photoconversion triggered by light induces conformational changes in the bilin chromophore around the ring C-D-connecting methine bridge and is followed by conformational changes in the protein. For plant phytochromes, multiple phytochrome interacting proteins that mediate signal transduction, nuclear translocation or protein degradation have been identified. Few interacting proteins are known as bacterial or fungal phytochromes. Here, we describe how the interacting partners were identified, what is known about the different interactions and in which context of signal transduction these interactions are to be seen. The three-dimensional arrangement of these interacting partners is not known. Using an artificial intelligence system-based modeling software, a few predicted and modulated examples of interactions of bacterial phytochromes with their interaction partners are interpreted.

Keywords: Cry; PIF3; PKS2; bacterial; fungal; interaction; plant.

Publication types

  • Review
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Artificial Intelligence
  • Bacterial Proteins / metabolism
  • Light
  • Phytochrome* / metabolism
  • Plants / metabolism
  • Signal Transduction

Substances

  • Phytochrome
  • Bacterial Proteins

Grants and funding

This work was supported by the Deutsche Forschungsgemeinschaft grant LA 799/18-1 to T.L. and KR 2034/1-1 to N.K. through project-ID 221545957—CRC 1078 “Protonation Dynamics in Protein Function”, subproject B06 (to P.S.), and through the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy—EXC 2008—390540038—UniSysCat. (Research Unit E to P.S.). We also thank the Einstein Center of Catalysis (EC2) funded by the Einstein Foundation Berlin for support (to P.S.).