Mature microRNA-binding protein QKI suppresses extracellular microRNA let-7b release

J Cell Sci. 2024 Nov 1;137(21):jcs261575. doi: 10.1242/jcs.261575. Epub 2024 Nov 6.

Abstract

Argonaute (AGO), a component of RNA-induced silencing complexes (RISCs), is a representative RNA-binding protein (RBP) known to bind with mature microRNAs (miRNAs) and is directly involved in post-transcriptional gene silencing. However, despite the biological significance of miRNAs, the roles of other miRNA-binding proteins (miRBPs) remain unclear in the regulation of miRNA loading, dissociation from RISCs and extracellular release. In this study, we performed protein arrays to profile miRBPs and identify 118 RBPs that directly bind to miRNAs. Among those proteins, the RBP quaking (QKI) inhibits extracellular release of the mature microRNA let-7b by controlling the loading of let-7b into extracellular vesicles via additional miRBPs such as AUF1 (also known as hnRNPD) and hnRNPK. The enhanced extracellular release of let-7b after QKI depletion activates Toll-like receptor 7 (TLR7) and promotes the production of proinflammatory cytokines in recipient cells, leading to brain inflammation in the mouse cortex. Thus, this study reveals the contribution of QKI to the inhibition of brain inflammation via regulation of extracellular let-7b release.

Keywords: AGO2; Extracellular vesicular miRNA; QKI; RNA-binding protein; let-7b.

MeSH terms

  • Animals
  • Cytokines / metabolism
  • Extracellular Vesicles / genetics
  • Extracellular Vesicles / metabolism
  • HEK293 Cells
  • Heterogeneous Nuclear Ribonucleoprotein D0 / metabolism
  • Heterogeneous-Nuclear Ribonucleoprotein D / genetics
  • Heterogeneous-Nuclear Ribonucleoprotein D / metabolism
  • Humans
  • Mice
  • Mice, Inbred C57BL
  • MicroRNAs* / genetics
  • MicroRNAs* / metabolism
  • RNA-Binding Proteins* / genetics
  • RNA-Binding Proteins* / metabolism
  • Toll-Like Receptor 7 / genetics
  • Toll-Like Receptor 7 / metabolism

Substances

  • MicroRNAs
  • RNA-Binding Proteins
  • QKI protein, human
  • Toll-Like Receptor 7
  • mirnlet7 microRNA, mouse
  • Heterogeneous Nuclear Ribonucleoprotein D0
  • mirnlet7 microRNA, human
  • Qk protein, mouse
  • Heterogeneous-Nuclear Ribonucleoprotein D
  • Cytokines