Structural basis for hepatitis B virus restriction by a viral receptor homologue

Nat Commun. 2024 Oct 25;15(1):9241. doi: 10.1038/s41467-024-53533-6.

Abstract

Macaque restricts hepatitis B virus (HBV) infection because its receptor homologue, NTCP (mNTCP), cannot bind preS1 on viral surface. To reveal how mNTCP loses the viral receptor function, we here solve the cryo-electron microscopy structure of mNTCP. Superposing on the human NTCP (hNTCP)-preS1 complex structure shows that Arg158 of mNTCP causes steric clash to prevent preS1 from embedding onto the bile acid tunnel of NTCP. Cell-based mutation analysis confirms that only Gly158 permitted preS1 binding, in contrast to robust bile acid transport among mutations. As the second determinant, Asn86 on the extracellular surface of mNTCP shows less capacity to restrain preS1 from dynamic fluctuation than Lys86 of hNTCP, resulting in unstable preS1 binding. Additionally, presence of long-chain conjugated-bile acids in the tunnel induces steric hindrance with preS1 through their tailed-chain. This study presents structural basis in which multiple sites in mNTCP constitute a molecular barrier to strictly restrict HBV.

MeSH terms

  • Animals
  • Bile Acids and Salts / chemistry
  • Bile Acids and Salts / metabolism
  • Cryoelectron Microscopy*
  • Hepatitis B / virology
  • Hepatitis B Surface Antigens / chemistry
  • Hepatitis B Surface Antigens / genetics
  • Hepatitis B Surface Antigens / metabolism
  • Hepatitis B virus* / chemistry
  • Hepatitis B virus* / genetics
  • Hepatitis B virus* / metabolism
  • Hepatitis B virus* / ultrastructure
  • Humans
  • Models, Molecular
  • Mutation
  • Organic Anion Transporters, Sodium-Dependent* / chemistry
  • Organic Anion Transporters, Sodium-Dependent* / genetics
  • Organic Anion Transporters, Sodium-Dependent* / metabolism
  • Protein Binding
  • Protein Precursors
  • Receptors, Virus / chemistry
  • Receptors, Virus / metabolism
  • Symporters* / chemistry
  • Symporters* / genetics
  • Symporters* / metabolism
  • Symporters* / ultrastructure

Substances

  • Organic Anion Transporters, Sodium-Dependent
  • sodium-bile acid cotransporter
  • Symporters
  • Receptors, Virus
  • Hepatitis B Surface Antigens
  • presurface protein 1, hepatitis B surface antigen
  • Bile Acids and Salts
  • Protein Precursors