Microbispora maris sp. nov., a novel actinobacterium isolated from the gill of the leopard coral grouper (Plectropomus leopardus)

Int J Syst Evol Microbiol. 2024 Nov;74(11). doi: 10.1099/ijsem.0.006568.

Abstract

A novel actinomycete, designated strain ZYX-F-249T, was isolated from the gill of a leopard coral grouper in Yongxing Island, Hainan Province, China. Based on 16S rRNA gene sequence analysis, strain ZYX-F-249T belonged to the genus Microbispora, with high similarities to Microbispora rosea ATCC 12950T (98.7 %), Microbispora hainanensis 211020T (98.5 %), Microbispora clausenae CLES2T (98.4 %), Microbispora bryophytorum NEAU-TX2-2T (98.1 %) and Microbispora oryzaeRL4-1ST (98.0 %). Phylogenetic analysis of the 16S rRNA gene sequence of strain ZYX-F-249T showed that the strain formed a stable subclade with Microbispora rosea ATCC 12950T in the genus Microbispora. The cell wall of the novel isolate contained meso-diaminopimelic acid, while whole-cell sugars were madurose, glucose and ribose. The predominant menaquinones were MK-9(H6), MK-9(H4), MK-9(H2) and MK-9(H0). The characteristic phospholipids (PLs) were phosphatidylethanolamine, phosphatidylinositol, diphosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylinositol mannoside, glycophospholipids and an unknown PL. The major cellular fatty acids (>10%) were iso-C16 : 0 and iso-C18 : 0. Genome sequencing showed a DNA G+C content of 71.6%. The low average nucleotide identity, digital DNA-DNA hybridization and average amino acid identity values demonstrated that strain ZYX-F-249T could be readily distinguished from closely related species. Based on data from these phylogenetic, chemotaxonomic and physiological characteristics, strain ZYX-F-249T represents a novel species of the genus Microbispora, for which the name Microbispora maris sp. nov. is proposed. The type strain is ZYX-F-249T (=CCTCC AA 2023030T =JCM 36778T).

Keywords: 16S rRNA gene; Microbispora maris sp. nov.; leopard coral grouper; polyphasic taxonomy.

MeSH terms

  • Actinomycetales / classification
  • Actinomycetales / genetics
  • Actinomycetales / isolation & purification
  • Animals
  • Bacterial Typing Techniques*
  • Base Composition*
  • Bass / microbiology
  • Cell Wall / chemistry
  • China
  • DNA, Bacterial* / genetics
  • Diaminopimelic Acid* / analysis
  • Fatty Acids* / analysis
  • Fatty Acids* / chemistry
  • Gills* / microbiology
  • Nucleic Acid Hybridization
  • Phospholipids / analysis
  • Phylogeny*
  • RNA, Ribosomal, 16S* / genetics
  • Sequence Analysis, DNA*
  • Vitamin K 2* / analogs & derivatives
  • Vitamin K 2* / analysis

Substances

  • RNA, Ribosomal, 16S
  • Fatty Acids
  • DNA, Bacterial
  • Vitamin K 2
  • Diaminopimelic Acid
  • Phospholipids