DNA sequences complementary to human 7 SK RNA show structural similarities to the short mobile elements of the mammalian genome

J Mol Biol. 1984 Aug 25;177(4):575-90. doi: 10.1016/0022-2836(84)90038-x.

Abstract

A complementary DNA clone of 7 SK RNA from HeLa cells was used to study the genomic organization of 7 SK sequences in the human genome. Genomic hybridizations and genomic clones show that 7 SK is homologous to a family of disperse repeated sequences most of which lack the 3' end of the 7 SK RNA sequence. Only few of the genomic K sequences are homologous to both 3' and 5' 7 SK probes and presumably include the gene(s) for 7 SK RNA. The sequence of four genomic 7 SK clones confirms that they are in most cases pseudogenes. Although Alu sequences are frequently found near the 3' and 5' end of K DNA, the sequences immediately flanking the pseudogenes are different in all clones studied. However, direct repeats were found flanking directly the K DNA or the K-Alu unit, suggesting that the K sequences alone or in conjunction with Alu DNA might constitute a mobile element.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cloning, Molecular
  • DNA* / genetics
  • Electrophoresis, Polyacrylamide Gel
  • Genes
  • Genotype
  • HeLa Cells
  • Humans
  • Nucleic Acid Hybridization
  • Recombination, Genetic

Substances

  • DNA

Associated data

  • GENBANK/M17540
  • GENBANK/X04233
  • GENBANK/X04235
  • GENBANK/X04236
  • GENBANK/X04237
  • GENBANK/X04238
  • GENBANK/X04992