Johnson JM - Search Results

1

Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.

Castle J, Garrett-Engele P, Armour CD, Duenwald SJ, Loerch PM, Meyer MR, Schadt EE, Stoughton R, Parrish ML, Shoemaker DD, Johnson JM. Castle J, et al. Among authors: johnson jm. Genome Biol. 2003;4(10):R66. doi: 10.1186/gb-2003-4-10-r66. Epub 2003 Sep 19. Genome Biol. 2003. PMID: 14519201 Free PMC article.

2

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.

Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. Johnson JM, et al. Science. 2003 Dec 19;302(5653):2141-4. doi: 10.1126/science.1090100. Science. 2003. PMID: 14684825

3

A comprehensive transcript index of the human genome generated using microarrays and computational approaches.

Schadt EE, Edwards SW, GuhaThakurta D, Holder D, Ying L, Svetnik V, Leonardson A, Hart KW, Russell A, Li G, Cavet G, Castle J, McDonagh P, Kan Z, Chen R, Kasarskis A, Margarint M, Caceres RM, Johnson JM, Armour CD, Garrett-Engele PW, Tsinoremas NF, Shoemaker DD. Schadt EE, et al. Among authors: johnson jm. Genome Biol. 2004;5(10):R73. doi: 10.1186/gb-2004-5-10-r73. Epub 2004 Sep 23. Genome Biol. 2004. PMID: 15461792 Free PMC article.

4

Expression of alternatively spliced sodium channel alpha-subunit genes. Unique splicing patterns are observed in dorsal root ganglia.

Raymond CK, Castle J, Garrett-Engele P, Armour CD, Kan Z, Tsinoremas N, Johnson JM. Raymond CK, et al. Among authors: johnson jm. J Biol Chem. 2004 Oct 29;279(44):46234-41. doi: 10.1074/jbc.M406387200. Epub 2004 Aug 9. J Biol Chem. 2004. PMID: 15302875 Free article.

5

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.

Johnson JM, Edwards S, Shoemaker D, Schadt EE. Johnson JM, et al. Trends Genet. 2005 Feb;21(2):93-102. doi: 10.1016/j.tig.2004.12.009. Trends Genet. 2005. PMID: 15661355 Review.

6

Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles.

Kan Z, Garrett-Engele PW, Johnson JM, Castle JC. Kan Z, et al. Among authors: johnson jm. Nucleic Acids Res. 2005 Sep 29;33(17):5659-66. doi: 10.1093/nar/gki834. Print 2005. Nucleic Acids Res. 2005. PMID: 16195578 Free PMC article.

7

Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways.

Levine DM, Haynor DR, Castle JC, Stepaniants SB, Pellegrini M, Mao M, Johnson JM. Levine DM, et al. Among authors: johnson jm. Genome Biol. 2006;7(10):R93. doi: 10.1186/gb-2006-7-10-r93. Epub 2006 Oct 17. Genome Biol. 2006. PMID: 17044931 Free PMC article.

8

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines.

Castle JC, Zhang C, Shah JK, Kulkarni AV, Kalsotra A, Cooper TA, Johnson JM. Castle JC, et al. Among authors: johnson jm. Nat Genet. 2008 Dec;40(12):1416-25. doi: 10.1038/ng.264. Epub 2008 Nov 2. Nat Genet. 2008. PMID: 18978788 Free PMC article.

9

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation.

Babak T, Garrett-Engele P, Armour CD, Raymond CK, Keller MP, Chen R, Rohl CA, Johnson JM, Attie AD, Fraser HB, Schadt EE. Babak T, et al. Among authors: johnson jm. BMC Genomics. 2010 Aug 13;11:473. doi: 10.1186/1471-2164-11-473. BMC Genomics. 2010. PMID: 20707912 Free PMC article.

10

Detection of novel splice forms in human and mouse using cross-species approach.

Kan Z, Castle J, Johnson JM, Tsinoremas NF. Kan Z, et al. Among authors: johnson jm. Pac Symp Biocomput. 2004:42-53. doi: 10.1142/9789812704856_0005. Pac Symp Biocomput. 2004. PMID: 14992491 Free article.

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