Schadt EE - Search Results

1

Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.

Castle J, Garrett-Engele P, Armour CD, Duenwald SJ, Loerch PM, Meyer MR, Schadt EE, Stoughton R, Parrish ML, Shoemaker DD, Johnson JM. Castle J, et al. Among authors: schadt ee. Genome Biol. 2003;4(10):R66. doi: 10.1186/gb-2003-4-10-r66. Epub 2003 Sep 19. Genome Biol. 2003. PMID: 14519201 Free PMC article.

2

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.

Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. Johnson JM, et al. Among authors: schadt ee. Science. 2003 Dec 19;302(5653):2141-4. doi: 10.1126/science.1090100. Science. 2003. PMID: 14684825

3

Microarray standard data set and figures of merit for comparing data processing methods and experiment designs.

He YD, Dai H, Schadt EE, Cavet G, Edwards SW, Stepaniants SB, Duenwald S, Kleinhanz R, Jones AR, Shoemaker DD, Stoughton RB. He YD, et al. Among authors: schadt ee. Bioinformatics. 2003 May 22;19(8):956-65. doi: 10.1093/bioinformatics/btg126. Bioinformatics. 2003. PMID: 12761058

4

A comprehensive transcript index of the human genome generated using microarrays and computational approaches.

Schadt EE, Edwards SW, GuhaThakurta D, Holder D, Ying L, Svetnik V, Leonardson A, Hart KW, Russell A, Li G, Cavet G, Castle J, McDonagh P, Kan Z, Chen R, Kasarskis A, Margarint M, Caceres RM, Johnson JM, Armour CD, Garrett-Engele PW, Tsinoremas NF, Shoemaker DD. Schadt EE, et al. Genome Biol. 2004;5(10):R73. doi: 10.1186/gb-2004-5-10-r73. Epub 2004 Sep 23. Genome Biol. 2004. PMID: 15461792 Free PMC article.

5

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.

Johnson JM, Edwards S, Shoemaker D, Schadt EE. Johnson JM, et al. Among authors: schadt ee. Trends Genet. 2005 Feb;21(2):93-102. doi: 10.1016/j.tig.2004.12.009. Trends Genet. 2005. PMID: 15661355 Review.

6

Experimental annotation of the human genome using microarray technology.

Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, McDonagh PD, Loerch PM, Leonardson A, Lum PY, Cavet G, Wu LF, Altschuler SJ, Edwards S, King J, Tsang JS, Schimmack G, Schelter JM, Koch J, Ziman M, Marton MJ, Li B, Cundiff P, Ward T, Castle J, Krolewski M, Meyer MR, Mao M, Burchard J, Kidd MJ, Dai H, Phillips JW, Linsley PS, Stoughton R, Scherer S, Boguski MS. Shoemaker DD, et al. Among authors: schadt ee. Nature. 2001 Feb 15;409(6822):922-7. doi: 10.1038/35057141. Nature. 2001. PMID: 11237012

7

Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences.

Su WL, Modrek B, GuhaThakurta D, Edwards S, Shah JK, Kulkarni AV, Russell A, Schadt EE, Johnson JM, Castle JC. Su WL, et al. Among authors: schadt ee. BMC Genomics. 2008 Jun 4;9:273. doi: 10.1186/1471-2164-9-273. BMC Genomics. 2008. PMID: 18533039 Free PMC article.

8

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation.

Babak T, Garrett-Engele P, Armour CD, Raymond CK, Keller MP, Chen R, Rohl CA, Johnson JM, Attie AD, Fraser HB, Schadt EE. Babak T, et al. Among authors: schadt ee. BMC Genomics. 2010 Aug 13;11:473. doi: 10.1186/1471-2164-11-473. BMC Genomics. 2010. PMID: 20707912 Free PMC article.

9

Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease.

Dobrin R, Zhu J, Molony C, Argman C, Parrish ML, Carlson S, Allan MF, Pomp D, Schadt EE. Dobrin R, et al. Among authors: schadt ee. Genome Biol. 2009;10(5):R55. doi: 10.1186/gb-2009-10-5-r55. Epub 2009 May 22. Genome Biol. 2009. PMID: 19463160 Free PMC article.

10

Genetics of gene expression surveyed in maize, mouse and man.

Schadt EE, Monks SA, Drake TA, Lusis AJ, Che N, Colinayo V, Ruff TG, Milligan SB, Lamb JR, Cavet G, Linsley PS, Mao M, Stoughton RB, Friend SH. Schadt EE, et al. Nature. 2003 Mar 20;422(6929):297-302. doi: 10.1038/nature01434. Nature. 2003. PMID: 12646919

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