Stoughton R - Search Results

1

Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.

Castle J, Garrett-Engele P, Armour CD, Duenwald SJ, Loerch PM, Meyer MR, Schadt EE, Stoughton R, Parrish ML, Shoemaker DD, Johnson JM. Castle J, et al. Among authors: stoughton r. Genome Biol. 2003;4(10):R66. doi: 10.1186/gb-2003-4-10-r66. Epub 2003 Sep 19. Genome Biol. 2003. PMID: 14519201 Free PMC article.

2

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.

Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. Johnson JM, et al. Among authors: stoughton r. Science. 2003 Dec 19;302(5653):2141-4. doi: 10.1126/science.1090100. Science. 2003. PMID: 14684825

3

Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays.

Dai H, Meyer M, Stepaniants S, Ziman M, Stoughton R. Dai H, et al. Among authors: stoughton r. Nucleic Acids Res. 2002 Aug 15;30(16):e86. doi: 10.1093/nar/gnf085. Nucleic Acids Res. 2002. PMID: 12177314 Free PMC article.

4

Microarray standard data set and figures of merit for comparing data processing methods and experiment designs.

He YD, Dai H, Schadt EE, Cavet G, Edwards SW, Stepaniants SB, Duenwald S, Kleinhanz R, Jones AR, Shoemaker DD, Stoughton RB. He YD, et al. Among authors: stoughton rb. Bioinformatics. 2003 May 22;19(8):956-65. doi: 10.1093/bioinformatics/btg126. Bioinformatics. 2003. PMID: 12761058

5

Experimental annotation of the human genome using microarray technology.

Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, McDonagh PD, Loerch PM, Leonardson A, Lum PY, Cavet G, Wu LF, Altschuler SJ, Edwards S, King J, Tsang JS, Schimmack G, Schelter JM, Koch J, Ziman M, Marton MJ, Li B, Cundiff P, Ward T, Castle J, Krolewski M, Meyer MR, Mao M, Burchard J, Kidd MJ, Dai H, Phillips JW, Linsley PS, Stoughton R, Scherer S, Boguski MS. Shoemaker DD, et al. Among authors: stoughton r. Nature. 2001 Feb 15;409(6822):922-7. doi: 10.1038/35057141. Nature. 2001. PMID: 11237012

6

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer.

Hughes TR, Mao M, Jones AR, Burchard J, Marton MJ, Shannon KW, Lefkowitz SM, Ziman M, Schelter JM, Meyer MR, Kobayashi S, Davis C, Dai H, He YD, Stephaniants SB, Cavet G, Walker WL, West A, Coffey E, Shoemaker DD, Stoughton R, Blanchard AP, Friend SH, Linsley PS. Hughes TR, et al. Among authors: stoughton r. Nat Biotechnol. 2001 Apr;19(4):342-7. doi: 10.1038/86730. Nat Biotechnol. 2001. PMID: 11283592

7

Genetics of gene expression surveyed in maize, mouse and man.

Schadt EE, Monks SA, Drake TA, Lusis AJ, Che N, Colinayo V, Ruff TG, Milligan SB, Lamb JR, Cavet G, Linsley PS, Mao M, Stoughton RB, Friend SH. Schadt EE, et al. Among authors: stoughton rb. Nature. 2003 Mar 20;422(6929):297-302. doi: 10.1038/nature01434. Nature. 2003. PMID: 12646919

8

Functional discovery via a compendium of expression profiles.

Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, Bennett HA, Coffey E, Dai H, He YD, Kidd MJ, King AM, Meyer MR, Slade D, Lum PY, Stepaniants SB, Shoemaker DD, Gachotte D, Chakraburtty K, Simon J, Bard M, Friend SH. Hughes TR, et al. Among authors: stoughton r. Cell. 2000 Jul 7;102(1):109-26. doi: 10.1016/s0092-8674(00)00015-5. Cell. 2000. PMID: 10929718 Free article.

9

Effects of atmospheric ozone on microarray data quality.

Fare TL, Coffey EM, Dai H, He YD, Kessler DA, Kilian KA, Koch JE, LeProust E, Marton MJ, Meyer MR, Stoughton RB, Tokiwa GY, Wang Y. Fare TL, et al. Among authors: stoughton rb. Anal Chem. 2003 Sep 1;75(17):4672-5. doi: 10.1021/ac034241b. Anal Chem. 2003. PMID: 14632079

10

Drug target validation and identification of secondary drug target effects using DNA microarrays.

Marton MJ, DeRisi JL, Bennett HA, Iyer VR, Meyer MR, Roberts CJ, Stoughton R, Burchard J, Slade D, Dai H, Bassett DE Jr, Hartwell LH, Brown PO, Friend SH. Marton MJ, et al. Among authors: stoughton r. Nat Med. 1998 Nov;4(11):1293-301. doi: 10.1038/3282. Nat Med. 1998. PMID: 9809554

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