Kulbachinskiy A - Search Results

1

Cold sensitivity of thermophilic and mesophilic RNA polymerases.

Kulbachinskiy A, Bass I, Bogdanova E, Goldfarb A, Nikiforov V. Kulbachinskiy A, et al. J Bacteriol. 2004 Nov;186(22):7818-20. doi: 10.1128/JB.186.22.7818-7820.2004. J Bacteriol. 2004. PMID: 15516599 Free PMC article.

2

DNA-targeting short Argonautes complex with effector proteins for collateral nuclease activity and bacterial population immunity.

Prostova M, Kanevskaya A, Panteleev V, Lisitskaya L, Perfilova Tugaeva KV, Sluchanko NN, Esyunina D, Kulbachinskiy A. Prostova M, et al. Among authors: kulbachinskiy a. Nat Microbiol. 2024 May;9(5):1368-1381. doi: 10.1038/s41564-024-01654-5. Epub 2024 Apr 15. Nat Microbiol. 2024. PMID: 38622379

3

Prokaryotic Argonaute nuclease cooperates with co-encoded RNase to acquire guide RNAs and target invader DNA.

Agapov A, Panteleev V, Kropocheva E, Kanevskaya A, Esyunina D, Kulbachinskiy A. Agapov A, et al. Among authors: kulbachinskiy a. Nucleic Acids Res. 2024 Jun 10;52(10):5895-5911. doi: 10.1093/nar/gkae345. Nucleic Acids Res. 2024. PMID: 38716875 Free PMC article.

4

Specific targeting of plasmids with Argonaute enables genome editing.

Esyunina D, Okhtienko A, Olina A, Panteleev V, Prostova M, Aravin AA, Kulbachinskiy A. Esyunina D, et al. Among authors: kulbachinskiy a. Nucleic Acids Res. 2023 May 8;51(8):4086-4099. doi: 10.1093/nar/gkad191. Nucleic Acids Res. 2023. PMID: 36987855 Free PMC article.

5

Bacterial Argonaute nucleases reveal different modes of DNA targeting in vitro and in vivo.

Lisitskaya L, Kropocheva E, Agapov A, Prostova M, Panteleev V, Yudin D, Ryazansky S, Kuzmenko A, Aravin AA, Esyunina D, Kulbachinskiy A. Lisitskaya L, et al. Among authors: kulbachinskiy a. Nucleic Acids Res. 2023 Jun 9;51(10):5106-5124. doi: 10.1093/nar/gkad290. Nucleic Acids Res. 2023. PMID: 37094066 Free PMC article.

6

Interaction with free beta' subunit unmasks DNA-binding domain of RNA polymerase sigma subunit.

Kulbachinskiy A, Mustaev A, Goldfarb A, Nikiforov V. Kulbachinskiy A, et al. FEBS Lett. 1999 Jul 2;454(1-2):71-4. doi: 10.1016/s0014-5793(99)00778-4. FEBS Lett. 1999. PMID: 10413098 Free article.

7

Aptamers to Escherichia coli core RNA polymerase that sense its interaction with rifampicin, sigma-subunit and GreB.

Kulbachinskiy A, Feklistov A, Krasheninnikov I, Goldfarb A, Nikiforov V. Kulbachinskiy A, et al. Eur J Biochem. 2004 Dec;271(23-24):4921-31. doi: 10.1111/j.1432-1033.2004.04461.x. Eur J Biochem. 2004. PMID: 15606780 Free article.

8

Different rifampin sensitivities of Escherichia coli and Mycobacterium tuberculosis RNA polymerases are not explained by the difference in the beta-subunit rifampin regions I and II.

Zenkin N, Kulbachinskiy A, Bass I, Nikiforov V. Zenkin N, et al. Among authors: kulbachinskiy a. Antimicrob Agents Chemother. 2005 Apr;49(4):1587-90. doi: 10.1128/AAC.49.4.1587-1590.2005. Antimicrob Agents Chemother. 2005. PMID: 15793146 Free PMC article.

9

Differences in contacts of RNA polymerases from Escherichia coli and Thermus aquaticus with lacUV5 promoter are determined by core-enzyme of RNA polymerase.

Kulbachinskiy AV, Nikiforov VG, Brodolin KL. Kulbachinskiy AV, et al. Biochemistry (Mosc). 2005 Nov;70(11):1227-30. doi: 10.1007/s10541-005-0251-8. Biochemistry (Mosc). 2005. PMID: 16336181

10

Region 3.2 of the sigma subunit contributes to the binding of the 3'-initiating nucleotide in the RNA polymerase active center and facilitates promoter clearance during initiation.

Kulbachinskiy A, Mustaev A. Kulbachinskiy A, et al. J Biol Chem. 2006 Jul 7;281(27):18273-6. doi: 10.1074/jbc.C600060200. Epub 2006 May 10. J Biol Chem. 2006. PMID: 16690607 Free article.

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