Mukherjee S - Search Results

1

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. Subramanian A, et al. Among authors: mukherjee s. Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50. doi: 10.1073/pnas.0506580102. Epub 2005 Sep 30. Proc Natl Acad Sci U S A. 2005. PMID: 16199517 Free PMC article.

2

Estimating dataset size requirements for classifying DNA microarray data.

Mukherjee S, Tamayo P, Rogers S, Rifkin R, Engle A, Campbell C, Golub TR, Mesirov JP. Mukherjee S, et al. J Comput Biol. 2003;10(2):119-42. doi: 10.1089/106652703321825928. J Comput Biol. 2003. PMID: 12804087

3

An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis.

Sweet-Cordero A, Mukherjee S, Subramanian A, You H, Roix JJ, Ladd-Acosta C, Mesirov J, Golub TR, Jacks T. Sweet-Cordero A, et al. Among authors: mukherjee s. Nat Genet. 2005 Jan;37(1):48-55. doi: 10.1038/ng1490. Epub 2004 Dec 19. Nat Genet. 2005. PMID: 15608639 Free article.

4

Characterizing the developmental pathways TTF-1, NKX2-8, and PAX9 in lung cancer.

Hsu DS, Acharya CR, Balakumaran BS, Riedel RF, Kim MK, Stevenson M, Tuchman S, Mukherjee S, Barry W, Dressman HK, Nevins JR, Powers S, Mu D, Potti A. Hsu DS, et al. Among authors: mukherjee s. Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5312-7. doi: 10.1073/pnas.0900827106. Epub 2009 Mar 11. Proc Natl Acad Sci U S A. 2009. PMID: 19279207 Free PMC article.

5

A genomic approach to colon cancer risk stratification yields biologic insights into therapeutic opportunities.

Garman KS, Acharya CR, Edelman E, Grade M, Gaedcke J, Sud S, Barry W, Diehl AM, Provenzale D, Ginsburg GS, Ghadimi BM, Ried T, Nevins JR, Mukherjee S, Hsu D, Potti A. Garman KS, et al. Among authors: mukherjee s. Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19432-7. doi: 10.1073/pnas.0806674105. Epub 2008 Dec 2. Proc Natl Acad Sci U S A. 2008. Retraction in: Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17569. doi: 10.1073/pnas.1115170108. PMID: 19050079 Free PMC article. Retracted.

6

Comparative study of gene set enrichment methods.

Abatangelo L, Maglietta R, Distaso A, D'Addabbo A, Creanza TM, Mukherjee S, Ancona N. Abatangelo L, et al. Among authors: mukherjee s. BMC Bioinformatics. 2009 Sep 2;10:275. doi: 10.1186/1471-2105-10-275. BMC Bioinformatics. 2009. PMID: 19725948 Free PMC article.

7

Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.

Edelman E, Porrello A, Guinney J, Balakumaran B, Bild A, Febbo PG, Mukherjee S. Edelman E, et al. Among authors: mukherjee s. Bioinformatics. 2006 Jul 15;22(14):e108-16. doi: 10.1093/bioinformatics/btl231. Bioinformatics. 2006. PMID: 16873460

8

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning.

Bennett BD, Xiong Q, Mukherjee S, Furey TS. Bennett BD, et al. Among authors: mukherjee s. PLoS One. 2012;7(9):e44635. doi: 10.1371/journal.pone.0044635. Epub 2012 Sep 13. PLoS One. 2012. PMID: 23028573 Free PMC article.

9

On the reproducibility of results of pathway analysis in genome-wide expression studies of colorectal cancers.

Maglietta R, Distaso A, Piepoli A, Palumbo O, Carella M, D'Addabbo A, Mukherjee S, Ancona N. Maglietta R, et al. Among authors: mukherjee s. J Biomed Inform. 2010 Jun;43(3):397-406. doi: 10.1016/j.jbi.2009.09.005. Epub 2009 Sep 29. J Biomed Inform. 2010. PMID: 19796710 Free article.

10

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets.

Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS. Xiong Q, et al. Among authors: mukherjee s. Genome Res. 2012 Feb;22(2):386-97. doi: 10.1101/gr.124370.111. Epub 2011 Sep 22. Genome Res. 2012. PMID: 21940837 Free PMC article.

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