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PhenCode: connecting ENCODE data with mutations and phenotype.
Giardine B, Riemer C, Hefferon T, Thomas D, Hsu F, Zielenski J, Sang Y, Elnitski L, Cutting G, Trumbower H, Kern A, Kuhn R, Patrinos GP, Hughes J, Higgs D, Chui D, Scriver C, Phommarinh M, Patnaik SK, Blumenfeld O, Gottlieb B, Vihinen M, Väliaho J, Kent J, Miller W, Hardison RC. Giardine B, et al. Among authors: miller w. Hum Mutat. 2007 Jun;28(6):554-62. doi: 10.1002/humu.20484. Hum Mutat. 2007. PMID: 17326095
GALA, a database for genomic sequence alignments and annotations.
Giardine B, Elnitski L, Riemer C, Makalowska I, Schwartz S, Miller W, Hardison RC. Giardine B, et al. Among authors: miller w. Genome Res. 2003 Apr;13(4):732-41. doi: 10.1101/gr.603103. Genome Res. 2003. PMID: 12671007 Free PMC article.
Galaxy: a platform for interactive large-scale genome analysis.
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. Giardine B, et al. Among authors: miller w. Genome Res. 2005 Oct;15(10):1451-5. doi: 10.1101/gr.4086505. Epub 2005 Sep 16. Genome Res. 2005. PMID: 16169926 Free PMC article.
Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data.
King DC, Taylor J, Zhang Y, Cheng Y, Lawson HA, Martin J; ENCODE groups for Transcriptional Regulation and Multispecies Sequence Analysis; Chiaromonte F, Miller W, Hardison RC. King DC, et al. Among authors: miller w. Genome Res. 2007 Jun;17(6):775-86. doi: 10.1101/gr.5592107. Genome Res. 2007. PMID: 17567996 Free PMC article.
6,149 results