Plevritis SK - Search Results

1

Extracting binary signals from microarray time-course data.

Sahoo D, Dill DL, Tibshirani R, Plevritis SK. Sahoo D, et al. Among authors: plevritis sk. Nucleic Acids Res. 2007;35(11):3705-12. doi: 10.1093/nar/gkm284. Epub 2007 May 21. Nucleic Acids Res. 2007. PMID: 17517782 Free PMC article.

2

Mapping spatial organization and genetic cell-state regulators to target immune evasion in ovarian cancer.

Yeh CY, Aguirre K, Laveroni O, Kim S, Wang A, Liang B, Zhang X, Han LM, Valbuena R, Bassik MC, Kim YM, Plevritis SK, Snyder MP, Howitt BE, Jerby L. Yeh CY, et al. Among authors: plevritis sk. Nat Immunol. 2024 Oct;25(10):1943-1958. doi: 10.1038/s41590-024-01943-5. Epub 2024 Aug 23. Nat Immunol. 2024. PMID: 39179931 Free PMC article.

3

The Impact of Model Assumptions on Personalized Lung Cancer Screening Recommendations.

Ten Haaf K, de Nijs K, Simoni G, Alban A, Cao P, Sun Z, Yong J, Jeon J, Toumazis I, Han SS, Gazelle GS, Kong CY, Plevritis SK, Meza R, de Koning HJ. Ten Haaf K, et al. Among authors: plevritis sk. Med Decis Making. 2024 Jul;44(5):497-511. doi: 10.1177/0272989X241249182. Epub 2024 May 13. Med Decis Making. 2024. PMID: 38738534 Free PMC article.

4

Genomic and proteomic analysis reveals a threshold level of MYC required for tumor maintenance.

Shachaf CM, Gentles AJ, Elchuri S, Sahoo D, Soen Y, Sharpe O, Perez OD, Chang M, Mitchel D, Robinson WH, Dill D, Nolan GP, Plevritis SK, Felsher DW. Shachaf CM, et al. Among authors: plevritis sk. Cancer Res. 2008 Jul 1;68(13):5132-42. doi: 10.1158/0008-5472.CAN-07-6192. Cancer Res. 2008. PMID: 18593912 Free PMC article.

5

Boolean implication networks derived from large scale, whole genome microarray datasets.

Sahoo D, Dill DL, Gentles AJ, Tibshirani R, Plevritis SK. Sahoo D, et al. Among authors: plevritis sk. Genome Biol. 2008 Oct 30;9(10):R157. doi: 10.1186/gb-2008-9-10-r157. Genome Biol. 2008. PMID: 18973690 Free PMC article.

6

Fast calculation of pairwise mutual information for gene regulatory network reconstruction.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Among authors: plevritis sk. Comput Methods Programs Biomed. 2009 May;94(2):177-80. doi: 10.1016/j.cmpb.2008.11.003. Epub 2009 Jan 22. Comput Methods Programs Biomed. 2009. PMID: 19167129

7

Simultaneous class discovery and classification of microarray data using spectral analysis.

Qiu P, Plevritis SK. Qiu P, et al. Among authors: plevritis sk. J Comput Biol. 2009 Jul;16(7):935-44. doi: 10.1089/cmb.2008.0227. J Comput Biol. 2009. PMID: 19580522 Free PMC article.

8

Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development.

Inlay MA, Bhattacharya D, Sahoo D, Serwold T, Seita J, Karsunky H, Plevritis SK, Dill DL, Weissman IL. Inlay MA, et al. Among authors: plevritis sk. Genes Dev. 2009 Oct 15;23(20):2376-81. doi: 10.1101/gad.1836009. Genes Dev. 2009. PMID: 19833765 Free PMC article.

9

Reducing the computational complexity of information theoretic approaches for reconstructing gene regulatory networks.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Among authors: plevritis sk. J Comput Biol. 2010 Feb;17(2):169-76. doi: 10.1089/cmb.2009.0052. J Comput Biol. 2010. PMID: 20078227 Free PMC article.

10

MiDReG: a method of mining developmentally regulated genes using Boolean implications.

Sahoo D, Seita J, Bhattacharya D, Inlay MA, Weissman IL, Plevritis SK, Dill DL. Sahoo D, et al. Among authors: plevritis sk. Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5732-7. doi: 10.1073/pnas.0913635107. Epub 2010 Mar 15. Proc Natl Acad Sci U S A. 2010. PMID: 20231483 Free PMC article.

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