Böcker S - Search Results

1

Peak intensity prediction in MALDI-TOF mass spectrometry: a machine learning study to support quantitative proteomics.

Timm W, Scherbart A, Böcker S, Kohlbacher O, Nattkemper TW. Timm W, et al. Among authors: bocker s. BMC Bioinformatics. 2008 Oct 20;9:443. doi: 10.1186/1471-2105-9-443. BMC Bioinformatics. 2008. PMID: 18937839 Free PMC article.

2

Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics.

Palmblad M, Böcker S, Degroeve S, Kohlbacher O, Käll L, Noble WS, Wilhelm M. Palmblad M, et al. Among authors: bocker s. J Proteome Res. 2022 Apr 1;21(4):1204-1207. doi: 10.1021/acs.jproteome.1c00900. Epub 2022 Feb 4. J Proteome Res. 2022. PMID: 35119864 Free PMC article.

3

De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation.

Bertsch A, Leinenbach A, Pervukhin A, Lubeck M, Hartmer R, Baessmann C, Elnakady YA, Müller R, Böcker S, Huber CG, Kohlbacher O. Bertsch A, et al. Among authors: bocker s. Electrophoresis. 2009 Nov;30(21):3736-47. doi: 10.1002/elps.200900332. Electrophoresis. 2009. PMID: 19862751

4

SAMPI: protein identification with mass spectra alignments.

Kaltenbach HM, Wilke A, Böcker S. Kaltenbach HM, et al. Among authors: bocker s. BMC Bioinformatics. 2007 Mar 26;8:102. doi: 10.1186/1471-2105-8-102. BMC Bioinformatics. 2007. PMID: 17386090 Free PMC article.

5

Feature-based molecular networking in the GNPS analysis environment.

Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, Cachet X, Caraballo-Rodriguez AM, Da Silva RR, Dang T, Garg N, Gauglitz JM, Gurevich A, Isaac G, Jarmusch AK, Kameník Z, Kang KB, Kessler N, Koester I, Korf A, Le Gouellec A, Ludwig M, Martin H C, McCall LI, McSayles J, Meyer SW, Mohimani H, Morsy M, Moyne O, Neumann S, Neuweger H, Nguyen NH, Nothias-Esposito M, Paolini J, Phelan VV, Pluskal T, Quinn RA, Rogers S, Shrestha B, Tripathi A, van der Hooft JJJ, Vargas F, Weldon KC, Witting M, Yang H, Zhang Z, Zubeil F, Kohlbacher O, Böcker S, Alexandrov T, Bandeira N, Wang M, Dorrestein PC. Nothias LF, et al. Among authors: bocker s. Nat Methods. 2020 Sep;17(9):905-908. doi: 10.1038/s41592-020-0933-6. Epub 2020 Aug 24. Nat Methods. 2020. PMID: 32839597 Free PMC article.

6

SNP and mutation discovery using base-specific cleavage and MALDI-TOF mass spectrometry.

Böcker S. Böcker S. Bioinformatics. 2003;19 Suppl 1:i44-53. doi: 10.1093/bioinformatics/btg1004. Bioinformatics. 2003. PMID: 12855436

7

Sequencing from compomers: using mass spectrometry for DNA de novo sequencing of 200+ nt.

Böcker S. Böcker S. J Comput Biol. 2004;11(6):1110-34. doi: 10.1089/cmb.2004.11.1110. J Comput Biol. 2004. PMID: 15662201

8

Towards de novo identification of metabolites by analyzing tandem mass spectra.

Böcker S, Rasche F. Böcker S, et al. Bioinformatics. 2008 Aug 15;24(16):i49-i55. doi: 10.1093/bioinformatics/btn270. Bioinformatics. 2008. PMID: 18689839 Free article.

9

Metabolite identification through multiple kernel learning on fragmentation trees.

Shen H, Dührkop K, Böcker S, Rousu J. Shen H, et al. Among authors: bocker s. Bioinformatics. 2014 Jun 15;30(12):i157-64. doi: 10.1093/bioinformatics/btu275. Bioinformatics. 2014. PMID: 24931979 Free PMC article.

10

Combinatorial approaches for mass spectra recalibration.

Bocker S, Makinen V. Bocker S, et al. IEEE/ACM Trans Comput Biol Bioinform. 2008 Jan-Mar;5(1):91-100. doi: 10.1109/tcbb.2007.1077. IEEE/ACM Trans Comput Biol Bioinform. 2008. PMID: 18245878 Free article.

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