Gentles AJ - Search Results

1

Fast calculation of pairwise mutual information for gene regulatory network reconstruction.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Among authors: gentles aj. Comput Methods Programs Biomed. 2009 May;94(2):177-80. doi: 10.1016/j.cmpb.2008.11.003. Epub 2009 Jan 22. Comput Methods Programs Biomed. 2009. PMID: 19167129

2

High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE.

Vahid MR, Brown EL, Steen CB, Zhang W, Jeon HS, Kang M, Gentles AJ, Newman AM. Vahid MR, et al. Among authors: gentles aj. Nat Biotechnol. 2023 Nov;41(11):1543-1548. doi: 10.1038/s41587-023-01697-9. Epub 2023 Mar 6. Nat Biotechnol. 2023. PMID: 36879008 Free PMC article.

3

Translatome analysis reveals microglia and astrocytes to be distinct regulators of inflammation in the hyperacute and acute phases after stroke.

Hernandez VG, Lechtenberg KJ, Peterson TC, Zhu L, Lucas TA, Bradshaw KP, Owah JO, Dorsey AI, Gentles AJ, Buckwalter MS. Hernandez VG, et al. Among authors: gentles aj. Glia. 2023 Aug;71(8):1960-1984. doi: 10.1002/glia.24377. Epub 2023 Apr 17. Glia. 2023. PMID: 37067534 Free PMC article.

4

Genomic and proteomic analysis reveals a threshold level of MYC required for tumor maintenance.

Shachaf CM, Gentles AJ, Elchuri S, Sahoo D, Soen Y, Sharpe O, Perez OD, Chang M, Mitchel D, Robinson WH, Dill D, Nolan GP, Plevritis SK, Felsher DW. Shachaf CM, et al. Among authors: gentles aj. Cancer Res. 2008 Jul 1;68(13):5132-42. doi: 10.1158/0008-5472.CAN-07-6192. Cancer Res. 2008. PMID: 18593912 Free PMC article.

5

Boolean implication networks derived from large scale, whole genome microarray datasets.

Sahoo D, Dill DL, Gentles AJ, Tibshirani R, Plevritis SK. Sahoo D, et al. Among authors: gentles aj. Genome Biol. 2008 Oct 30;9(10):R157. doi: 10.1186/gb-2008-9-10-r157. Genome Biol. 2008. PMID: 18973690 Free PMC article.

6

A pluripotency signature predicts histologic transformation and influences survival in follicular lymphoma patients.

Gentles AJ, Alizadeh AA, Lee SI, Myklebust JH, Shachaf CM, Shahbaba B, Levy R, Koller D, Plevritis SK. Gentles AJ, et al. Blood. 2009 Oct 8;114(15):3158-66. doi: 10.1182/blood-2009-02-202465. Epub 2009 Jul 27. Blood. 2009. PMID: 19636063 Free PMC article.

7

Characterization of patient specific signaling via augmentation of Bayesian networks with disease and patient state nodes.

Sachs K, Gentles AJ, Youland R, Itani S, Irish J, Nolan GP, Plevritis SK. Sachs K, et al. Among authors: gentles aj. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:6624-7. doi: 10.1109/IEMBS.2009.5332563. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19963681 Free PMC article.

8

Reducing the computational complexity of information theoretic approaches for reconstructing gene regulatory networks.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Among authors: gentles aj. J Comput Biol. 2010 Feb;17(2):169-76. doi: 10.1089/cmb.2009.0052. J Comput Biol. 2010. PMID: 20078227 Free PMC article.

9

Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia.

Gentles AJ, Plevritis SK, Majeti R, Alizadeh AA. Gentles AJ, et al. JAMA. 2010 Dec 22;304(24):2706-15. doi: 10.1001/jama.2010.1862. JAMA. 2010. PMID: 21177505 Free PMC article.

10

Discovering biological progression underlying microarray samples.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Among authors: gentles aj. PLoS Comput Biol. 2011 Apr;7(4):e1001123. doi: 10.1371/journal.pcbi.1001123. Epub 2011 Apr 14. PLoS Comput Biol. 2011. PMID: 21533210 Free PMC article.

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