Xu H - Search Results

1

Validation of an LC-MS based approach for profiling histones in chronic lymphocytic leukemia.

Su X, Lucas DM, Zhang L, Xu H, Zabrouskov V, Davis ME, Knapp AR, Young DC, Payne PR, Parthun MR, Marcucci G, Grever MR, Byrd JC, Freitas MA. Su X, et al. Among authors: xu h. Proteomics. 2009 Mar;9(5):1197-206. doi: 10.1002/pmic.200800333. Proteomics. 2009. PMID: 19253275 Free PMC article.

2

MassMatrix: a database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data.

Xu H, Freitas MA. Xu H, et al. Proteomics. 2009 Mar;9(6):1548-55. doi: 10.1002/pmic.200700322. Proteomics. 2009. PMID: 19235167 Free PMC article.

3

A hierarchical MS2/MS3 database search algorithm for automated analysis of phosphopeptide tandem mass spectra.

Xu H, Wang L, Sallans L, Freitas MA. Xu H, et al. Proteomics. 2009 Apr;9(7):1763-70. doi: 10.1002/pmic.200800282. Proteomics. 2009. PMID: 19288523 Free PMC article.

4

Assaying pharmacodynamic endpoints with targeted therapy: flavopiridol and 17AAG induced dephosphorylation of histone H1.5 in acute myeloid leukemia.

Wang L, Harshman SW, Liu S, Ren C, Xu H, Sallans L, Grever M, Byrd JC, Marcucci G, Freitas MA. Wang L, et al. Among authors: xu h. Proteomics. 2010 Dec;10(23):4281-92. doi: 10.1002/pmic.201000080. Proteomics. 2010. PMID: 21110323 Free PMC article.

5

A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time.

Xu H, Yang L, Freitas MA. Xu H, et al. BMC Bioinformatics. 2008 Aug 19;9:347. doi: 10.1186/1471-2105-9-347. BMC Bioinformatics. 2008. PMID: 18713471 Free PMC article.

6

Mass spectrometry profiles superoxide-induced intramolecular disulfide in the FMN-binding subunit of mitochondrial Complex I.

Zhang L, Xu H, Chen CL, Green-Church KB, Freitas MA, Chen YR. Zhang L, et al. Among authors: xu h. J Am Soc Mass Spectrom. 2008 Dec;19(12):1875-86. doi: 10.1016/j.jasms.2008.08.004. Epub 2008 Aug 12. J Am Soc Mass Spectrom. 2008. PMID: 18789718 Free PMC article.

.-)-induced intramolecular disulfide formation at the 51, kDa subunit was determined by tandem mass spectrometry and database searching, with the latter accomplished by adaptation of the in-house developed database search engine, MassMatrix [Xu, H., et al., J. Prote …

.-)-induced intramolecular disulfide formation at the 51, kDa subunit was determined by tandem mass spectrometry and database searching, wit …

7

Automated diagnosis of LC-MS/MS performance.

Xu H, Freitas MA. Xu H, et al. Bioinformatics. 2009 May 15;25(10):1341-3. doi: 10.1093/bioinformatics/btp155. Epub 2009 Mar 20. Bioinformatics. 2009. PMID: 19304874 Free PMC article.

8

A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data.

Xu H, Freitas MA. Xu H, et al. BMC Bioinformatics. 2007 Apr 20;8:133. doi: 10.1186/1471-2105-8-133. BMC Bioinformatics. 2007. PMID: 17448237 Free PMC article.

9

Identification and characterization of disulfide bonds in proteins and peptides from tandem MS data by use of the MassMatrix MS/MS search engine.

Xu H, Zhang L, Freitas MA. Xu H, et al. J Proteome Res. 2008 Jan;7(1):138-44. doi: 10.1021/pr070363z. Epub 2007 Dec 12. J Proteome Res. 2008. PMID: 18072732 Free PMC article.

10

Monte carlo simulation-based algorithms for analysis of shotgun proteomic data.

Xu H, Freitas MA. Xu H, et al. J Proteome Res. 2008 Jul;7(7):2605-15. doi: 10.1021/pr800002u. Epub 2008 Jun 11. J Proteome Res. 2008. PMID: 18543962 Free PMC article.

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