Lu X - Search Results

1

Revealing a signaling role of phytosphingosine-1-phosphate in yeast.

Cowart LA, Shotwell M, Worley ML, Richards AJ, Montefusco DJ, Hannun YA, Lu X. Cowart LA, et al. Among authors: lu x. Mol Syst Biol. 2010;6:349. doi: 10.1038/msb.2010.3. Epub 2010 Feb 16. Mol Syst Biol. 2010. PMID: 20160710 Free PMC article.

2

Revealing functionally coherent subsets using a spectral clustering and an information integration approach.

Richards AJ, Schwacke JH, Rohrer B, Cowart LA, Lu X. Richards AJ, et al. Among authors: lu x. BMC Syst Biol. 2012;6 Suppl 3(Suppl 3):S7. doi: 10.1186/1752-0509-6-S3-S7. Epub 2012 Dec 17. BMC Syst Biol. 2012. PMID: 23282411 Free PMC article.

3

Distinct signaling roles of ceramide species in yeast revealed through systematic perturbation and systems biology analyses.

Montefusco DJ, Chen L, Matmati N, Lu S, Newcomb B, Cooper GF, Hannun YA, Lu X. Montefusco DJ, et al. Among authors: lu x, lu s. Sci Signal. 2013 Oct 29;6(299):rs14. doi: 10.1126/scisignal.2004515. Sci Signal. 2013. PMID: 24170935 Free PMC article.

4

Assessing the functional coherence of gene sets with metrics based on the Gene Ontology graph.

Richards AJ, Muller B, Shotwell M, Cowart LA, Rohrer B, Lu X. Richards AJ, et al. Among authors: lu x. Bioinformatics. 2010 Jun 15;26(12):i79-87. doi: 10.1093/bioinformatics/btq203. Bioinformatics. 2010. PMID: 20529941 Free PMC article.

5

Distinct roles for de novo versus hydrolytic pathways of sphingolipid biosynthesis in Saccharomyces cerevisiae.

Cowart LA, Okamoto Y, Lu X, Hannun YA. Cowart LA, et al. Among authors: lu x. Biochem J. 2006 Feb 1;393(Pt 3):733-40. doi: 10.1042/BJ20050643. Biochem J. 2006. PMID: 16201964 Free PMC article.

6

GOGrapher: A Python library for GO graph representation and analysis.

Muller B, Richards AJ, Jin B, Lu X. Muller B, et al. Among authors: lu x. BMC Res Notes. 2009 Jul 7;2:122. doi: 10.1186/1756-0500-2-122. BMC Res Notes. 2009. PMID: 19583843 Free PMC article.

7

From data towards knowledge: revealing the architecture of signaling systems by unifying knowledge mining and data mining of systematic perturbation data.

Lu S, Jin B, Cowart LA, Lu X. Lu S, et al. Among authors: lu x. PLoS One. 2013 Apr 23;8(4):e61134. doi: 10.1371/journal.pone.0061134. Print 2013. PLoS One. 2013. PMID: 23637789 Free PMC article.

8

Signal-Oriented Pathway Analyses Reveal a Signaling Complex as a Synthetic Lethal Target for p53 Mutations.

Lu S, Cai C, Yan G, Zhou Z, Wan Y, Chen V, Chen L, Cooper GF, Obeid LM, Hannun YA, Lee AV, Lu X. Lu S, et al. Among authors: lu x. Cancer Res. 2016 Dec 1;76(23):6785-6794. doi: 10.1158/0008-5472.CAN-16-1740. Epub 2016 Oct 10. Cancer Res. 2016. PMID: 27758891 Free PMC article.

9

Signaling network prediction by the Ontology Fingerprint enhanced Bayesian network.

Qin T, Tsoi LC, Sims KJ, Lu X, Zheng WJ. Qin T, et al. Among authors: lu x. BMC Syst Biol. 2012;6 Suppl 3(Suppl 3):S3. doi: 10.1186/1752-0509-6-S3-S3. Epub 2012 Dec 17. BMC Syst Biol. 2012. PMID: 23282239 Free PMC article.

10

Novel metrics for evaluating the functional coherence of protein groups via protein semantic network.

Zheng B, Lu X. Zheng B, et al. Among authors: lu x. Genome Biol. 2007;8(7):R153. doi: 10.1186/gb-2007-8-7-r153. Genome Biol. 2007. PMID: 17672896 Free PMC article.

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