Korf I - Search Results

1

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences.

Kovach A, Wegrzyn JL, Parra G, Holt C, Bruening GE, Loopstra CA, Hartigan J, Yandell M, Langley CH, Korf I, Neale DB. Kovach A, et al. Among authors: korf i. BMC Genomics. 2010 Jul 7;11:420. doi: 10.1186/1471-2164-11-420. BMC Genomics. 2010. PMID: 20609256 Free PMC article.

2

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.

Parra G, Bradnam K, Korf I. Parra G, et al. Among authors: korf i. Bioinformatics. 2007 May 1;23(9):1061-7. doi: 10.1093/bioinformatics/btm071. Epub 2007 Mar 1. Bioinformatics. 2007. PMID: 17332020

3

Assessing the gene space in draft genomes.

Parra G, Bradnam K, Ning Z, Keane T, Korf I. Parra G, et al. Among authors: korf i. Nucleic Acids Res. 2009 Jan;37(1):289-97. doi: 10.1093/nar/gkn916. Epub 2008 Nov 28. Nucleic Acids Res. 2009. PMID: 19042974 Free PMC article.

4

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.

Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M. Cantarel BL, et al. Among authors: korf i. Genome Res. 2008 Jan;18(1):188-96. doi: 10.1101/gr.6743907. Epub 2007 Nov 19. Genome Res. 2008. PMID: 18025269 Free PMC article.

5

Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression.

Rose AB, Elfersi T, Parra G, Korf I. Rose AB, et al. Among authors: korf i. Plant Cell. 2008 Mar;20(3):543-51. doi: 10.1105/tpc.107.057190. Epub 2008 Mar 4. Plant Cell. 2008. PMID: 18319396 Free PMC article.

6

Comparative and functional analysis of intron-mediated enhancement signals reveals conserved features among plants.

Parra G, Bradnam K, Rose AB, Korf I. Parra G, et al. Among authors: korf i. Nucleic Acids Res. 2011 Jul;39(13):5328-37. doi: 10.1093/nar/gkr043. Epub 2011 Mar 22. Nucleic Acids Res. 2011. PMID: 21427088 Free PMC article.

7

A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues.

Halstead MM, Kern C, Saelao P, Wang Y, Chanthavixay G, Medrano JF, Van Eenennaam AL, Korf I, Tuggle CK, Ernst CW, Zhou H, Ross PJ. Halstead MM, et al. Among authors: korf i. BMC Genomics. 2020 Oct 7;21(1):698. doi: 10.1186/s12864-020-07078-9. BMC Genomics. 2020. PMID: 33028202 Free PMC article.

8

Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.

Kern C, Wang Y, Chitwood J, Korf I, Delany M, Cheng H, Medrano JF, Van Eenennaam AL, Ernst C, Ross P, Zhou H. Kern C, et al. Among authors: korf i. BMC Genomics. 2018 Sep 18;19(1):684. doi: 10.1186/s12864-018-5037-7. BMC Genomics. 2018. PMID: 30227846 Free PMC article.

9

Sequencing the transcriptome of milk production: milk trumps mammary tissue.

Lemay DG, Hovey RC, Hartono SR, Hinde K, Smilowitz JT, Ventimiglia F, Schmidt KA, Lee JW, Islas-Trejo A, Silva PI, Korf I, Medrano JF, Barry PA, German JB. Lemay DG, et al. Among authors: korf i. BMC Genomics. 2013 Dec 12;14:872. doi: 10.1186/1471-2164-14-872. BMC Genomics. 2013. PMID: 24330573 Free PMC article.

10

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes.

Lemay DG, Martin WF, Hinrichs AS, Rijnkels M, German JB, Korf I, Pollard KS. Lemay DG, et al. Among authors: korf i. BMC Bioinformatics. 2012 Sep 28;13:253. doi: 10.1186/1471-2105-13-253. BMC Bioinformatics. 2012. PMID: 23020263 Free PMC article.

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