Nagasaki M - Search Results

1

Model-free unsupervised gene set screening based on information enrichment in expression profiles.

Niida A, Imoto S, Yamaguchi R, Nagasaki M, Fujita A, Shimamura T, Miyano S. Niida A, et al. Among authors: nagasaki m. Bioinformatics. 2010 Dec 15;26(24):3090-7. doi: 10.1093/bioinformatics/btq592. Epub 2010 Oct 19. Bioinformatics. 2010. PMID: 20959379

2

Hybrid Petri net representation of gene regulatory network.

Matsuno H, Doi A, Nagasaki M, Miyano S. Matsuno H, et al. Among authors: nagasaki m. Pac Symp Biocomput. 2000:341-52. doi: 10.1142/9789814447331_0032. Pac Symp Biocomput. 2000. PMID: 10902182 Free article.

3

Genomic Object Net: I. A platform for modelling and simulating biopathways.

Nagasaki M, Doi A, Matsuno H, Miyano S. Nagasaki M, et al. Appl Bioinformatics. 2003;2(3):181-4. Appl Bioinformatics. 2003. PMID: 15130806

4

Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.

Doi A, Nagasaki M, Fujita S, Matsuno H, Miyano S. Doi A, et al. Among authors: nagasaki m. Appl Bioinformatics. 2003;2(3):185-8. Appl Bioinformatics. 2003. PMID: 15130807

5

A versatile petri net based architecture for modeling and simulation of complex biological processes.

Nagasaki M, Doi A, Matsuno H, Miyano S. Nagasaki M, et al. Genome Inform. 2004;15(1):180-97. Genome Inform. 2004. PMID: 15712121

6

Constructing biological pathway models with hybrid functional Petri nets.

Doi A, Fujita S, Matsuno H, Nagasaki M, Miyano S. Doi A, et al. Among authors: nagasaki m. In Silico Biol. 2004;4(3):271-91. In Silico Biol. 2004. PMID: 15724280

7

[Dynamic pathway modeling language: CSML].

Nagasaki M, Doi A, Miyano S. Nagasaki M, et al. Tanpakushitsu Kakusan Koso. 2005 Dec;50(16 Suppl):2269-74. Tanpakushitsu Kakusan Koso. 2005. PMID: 16411461 Review. Japanese. No abstract available.

8

Simulation-based validation of the p53 transcriptional activity with hybrid functional petri net.

Doi A, Nagasaki M, Matsuno H, Miyano S. Doi A, et al. Among authors: nagasaki m. In Silico Biol. 2006;6(1-2):1-13. In Silico Biol. 2006. PMID: 16789909

9

Automatic drawing of biological networks using cross cost and subcomponent data.

Kato M, Nagasaki M, Doi A, Miyano S. Kato M, et al. Among authors: nagasaki m. Genome Inform. 2005;16(2):22-31. Genome Inform. 2005. PMID: 16901086

10

AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction.

Saito A, Nagasaki M, Oyama M, Kozuka-Hata H, Semba K, Sugano S, Yamamoto T, Miyano S. Saito A, et al. Among authors: nagasaki m. BMC Bioinformatics. 2007 Jan 18;8:15. doi: 10.1186/1471-2105-8-15. BMC Bioinformatics. 2007. PMID: 17233908 Free PMC article.

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