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ENCODE whole-genome data in the UCSC genome browser (2011 update).
Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ. Raney BJ, et al. Among authors: kent wj. Nucleic Acids Res. 2011 Jan;39(Database issue):D871-5. doi: 10.1093/nar/gkq1017. Epub 2010 Oct 30. Nucleic Acids Res. 2011. PMID: 21037257 Free PMC article.
The human genome browser at UCSC.
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. Kent WJ, et al. Genome Res. 2002 Jun;12(6):996-1006. doi: 10.1101/gr.229102. Genome Res. 2002. PMID: 12045153 Free PMC article.
The UCSC Table Browser data retrieval tool.
Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. Karolchik D, et al. Among authors: kent wj. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D493-6. doi: 10.1093/nar/gkh103. Nucleic Acids Res. 2004. PMID: 14681465 Free PMC article.
The UCSC Proteome Browser.
Hsu F, Pringle TH, Kuhn RM, Karolchik D, Diekhans M, Haussler D, Kent WJ. Hsu F, et al. Among authors: kent wj. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D454-8. doi: 10.1093/nar/gki100. Nucleic Acids Res. 2005. PMID: 15608236 Free PMC article.
The UCSC Known Genes.
Hsu F, Kent WJ, Clawson H, Kuhn RM, Diekhans M, Haussler D. Hsu F, et al. Among authors: kent wj. Bioinformatics. 2006 May 1;22(9):1036-46. doi: 10.1093/bioinformatics/btl048. Epub 2006 Feb 24. Bioinformatics. 2006. PMID: 16500937
Variation resources at UC Santa Cruz.
Thomas DJ, Trumbower H, Kern AD, Rhead BL, Kuhn RM, Haussler D, Kent WJ. Thomas DJ, et al. Among authors: kent wj. Nucleic Acids Res. 2007 Jan;35(Database issue):D716-20. doi: 10.1093/nar/gkl953. Epub 2006 Dec 6. Nucleic Acids Res. 2007. PMID: 17151077 Free PMC article.
The ENCODE Project at UC Santa Cruz.
Thomas DJ, Rosenbloom KR, Clawson H, Hinrichs AS, Trumbower H, Raney BJ, Karolchik D, Barber GP, Harte RA, Hillman-Jackson J, Kuhn RM, Rhead BL, Smith KE, Thakkapallayil A, Zweig AS; ENCODE Project Consortium; Haussler D, Kent WJ. Thomas DJ, et al. Among authors: kent wj. Nucleic Acids Res. 2007 Jan;35(Database issue):D663-7. doi: 10.1093/nar/gkl1017. Epub 2006 Dec 13. Nucleic Acids Res. 2007. PMID: 17166863 Free PMC article.
Comparative genomic analysis using the UCSC genome browser.
Karolchik D, Bejerano G, Hinrichs AS, Kuhn RM, Miller W, Rosenbloom KR, Zweig AS, Haussler D, Kent WJ. Karolchik D, et al. Among authors: kent wj. Methods Mol Biol. 2007;395:17-34. doi: 10.1007/978-1-59745-514-5_2. Methods Mol Biol. 2007. PMID: 17993665
The UCSC Genome Browser.
Karolchik D, Hinrichs AS, Kent WJ. Karolchik D, et al. Among authors: kent wj. Curr Protoc Bioinformatics. 2007 Mar;Chapter 1:Unit 1.4. doi: 10.1002/0471250953.bi0104s17. Curr Protoc Bioinformatics. 2007. PMID: 18428780
UCSC genome browser tutorial.
Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ. Zweig AS, et al. Among authors: kent wj. Genomics. 2008 Aug;92(2):75-84. doi: 10.1016/j.ygeno.2008.02.003. Epub 2008 Jun 2. Genomics. 2008. PMID: 18514479 Free article. Review.
128 results