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Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection.
Kouyos RD, von Wyl V, Yerly S, Böni J, Rieder P, Joos B, Taffé P, Shah C, Bürgisser P, Klimkait T, Weber R, Hirschel B, Cavassini M, Rauch A, Battegay M, Vernazza PL, Bernasconi E, Ledergerber B, Bonhoeffer S, Günthard HF; Swiss HIV Cohort Study. Kouyos RD, et al. Among authors: rieder p. Clin Infect Dis. 2011 Feb 15;52(4):532-9. doi: 10.1093/cid/ciq164. Epub 2011 Jan 10. Clin Infect Dis. 2011. PMID: 21220770 Free PMC article.
Association between specific HIV-1 Env traits and virologic control in vivo.
Joos B, Rieder P, Fischer M, Kuster H, Rusert P, Trkola A, Pillai SK, Wong JK, Weber R, Günthard HF. Joos B, et al. Among authors: rieder p. Infect Genet Evol. 2010 Apr;10(3):365-72. doi: 10.1016/j.meegid.2009.06.002. Epub 2009 Jun 11. Infect Genet Evol. 2010. PMID: 19524069 Free PMC article.
Estimating the basic reproductive number from viral sequence data.
Stadler T, Kouyos R, von Wyl V, Yerly S, Böni J, Bürgisser P, Klimkait T, Joos B, Rieder P, Xie D, Günthard HF, Drummond AJ, Bonhoeffer S; Swiss HIV Cohort Study. Stadler T, et al. Among authors: rieder p. Mol Biol Evol. 2012 Jan;29(1):347-57. doi: 10.1093/molbev/msr217. Epub 2011 Sep 2. Mol Biol Evol. 2012. PMID: 21890480
Origin of minority drug-resistant HIV-1 variants in primary HIV-1 infection.
Metzner KJ, Scherrer AU, Preiswerk B, Joos B, von Wyl V, Leemann C, Rieder P, Braun D, Grube C, Kuster H, Böni J, Yerly S, Klimkait T, Aubert V, Furrer H, Battegay M, Vernazza PL, Cavassini M, Calmy A, Bernasconi E, Weber R, Günthard HF; Swiss HIV Cohort Study. Metzner KJ, et al. Among authors: rieder p. J Infect Dis. 2013 Oct 1;208(7):1102-12. doi: 10.1093/infdis/jit310. Epub 2013 Jul 11. J Infect Dis. 2013. PMID: 23847055 Free article.
Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs.
Oberle CS, Joos B, Rusert P, Campbell NK, Beauparlant D, Kuster H, Weber J, Schenkel CD, Scherrer AU, Magnus C, Kouyos R, Rieder P, Niederöst B, Braun DL, Pavlovic J, Böni J, Yerly S, Klimkait T, Aubert V, Trkola A, Metzner KJ, Günthard HF; Swiss HIV Cohort Study (SHCS). Oberle CS, et al. Among authors: rieder p. Retrovirology. 2016 Sep 5;13(1):62. doi: 10.1186/s12977-016-0299-0. Retrovirology. 2016. PMID: 27595568 Free PMC article.
63 results