Qiu P - Search Results

1

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.

Bendall SC, Simonds EF, Qiu P, Amir el-AD, Krutzik PO, Finck R, Bruggner RV, Melamed R, Trejo A, Ornatsky OI, Balderas RS, Plevritis SK, Sachs K, Pe'er D, Tanner SD, Nolan GP. Bendall SC, et al. Among authors: qiu p. Science. 2011 May 6;332(6030):687-96. doi: 10.1126/science.1198704. Science. 2011. PMID: 21551058 Free PMC article.

2

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE.

Qiu P, Simonds EF, Bendall SC, Gibbs KD Jr, Bruggner RV, Linderman MD, Sachs K, Nolan GP, Plevritis SK. Qiu P, et al. Nat Biotechnol. 2011 Oct 2;29(10):886-91. doi: 10.1038/nbt.1991. Nat Biotechnol. 2011. PMID: 21964415 Free PMC article.

3

CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data.

Linderman MD, Bjornson Z, Simonds EF, Qiu P, Bruggner RV, Sheode K, Meng TH, Plevritis SK, Nolan GP. Linderman MD, et al. Among authors: qiu p. Bioinformatics. 2012 Sep 15;28(18):2400-1. doi: 10.1093/bioinformatics/bts425. Epub 2012 Jul 10. Bioinformatics. 2012. PMID: 22782546 Free PMC article.

4

Visualization and cellular hierarchy inference of single-cell data using SPADE.

Anchang B, Hart TD, Bendall SC, Qiu P, Bjornson Z, Linderman M, Nolan GP, Plevritis SK. Anchang B, et al. Among authors: qiu p. Nat Protoc. 2016 Jul;11(7):1264-79. doi: 10.1038/nprot.2016.066. Epub 2016 Jun 16. Nat Protoc. 2016. PMID: 27310265

5

Fast calculation of pairwise mutual information for gene regulatory network reconstruction.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. Comput Methods Programs Biomed. 2009 May;94(2):177-80. doi: 10.1016/j.cmpb.2008.11.003. Epub 2009 Jan 22. Comput Methods Programs Biomed. 2009. PMID: 19167129

6

Discovering biological progression underlying microarray samples.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. PLoS Comput Biol. 2011 Apr;7(4):e1001123. doi: 10.1371/journal.pcbi.1001123. Epub 2011 Apr 14. PLoS Comput Biol. 2011. PMID: 21533210 Free PMC article.

7

TreeVis: a MATLAB-based tool for tree visualization.

Qiu P, Plevritis SK. Qiu P, et al. Comput Methods Programs Biomed. 2013 Jan;109(1):74-6. doi: 10.1016/j.cmpb.2012.08.008. Epub 2012 Oct 1. Comput Methods Programs Biomed. 2013. PMID: 23036855 Free PMC article.

8

Simultaneous class discovery and classification of microarray data using spectral analysis.

Qiu P, Plevritis SK. Qiu P, et al. J Comput Biol. 2009 Jul;16(7):935-44. doi: 10.1089/cmb.2008.0227. J Comput Biol. 2009. PMID: 19580522 Free PMC article.

9

Reconstructing directed signed gene regulatory network from microarray data.

Qiu P, Plevritis SK. Qiu P, et al. IEEE Trans Biomed Eng. 2011 Dec;58(12):3518-21. doi: 10.1109/TBME.2011.2163188. Epub 2011 Jul 29. IEEE Trans Biomed Eng. 2011. PMID: 21803675

10

Reducing the computational complexity of information theoretic approaches for reconstructing gene regulatory networks.

Qiu P, Gentles AJ, Plevritis SK. Qiu P, et al. J Comput Biol. 2010 Feb;17(2):169-76. doi: 10.1089/cmb.2009.0052. J Comput Biol. 2010. PMID: 20078227 Free PMC article.

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