Liu XS - Search Results

1

Cistrome: an integrative platform for transcriptional regulation studies.

Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin H, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS. Liu T, et al. Among authors: liu xs. Genome Biol. 2011 Aug 22;12(8):R83. doi: 10.1186/gb-2011-12-8-r83. Genome Biol. 2011. PMID: 21859476 Free PMC article.

2

A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.

Li W, Meyer CA, Liu XS. Li W, et al. Among authors: liu xs. Bioinformatics. 2005 Jun;21 Suppl 1:i274-82. doi: 10.1093/bioinformatics/bti1046. Bioinformatics. 2005. PMID: 15961467

3

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1.

Carroll JS, Liu XS, Brodsky AS, Li W, Meyer CA, Szary AJ, Eeckhoute J, Shao W, Hestermann EV, Geistlinger TR, Fox EA, Silver PA, Brown M. Carroll JS, et al. Among authors: liu xs. Cell. 2005 Jul 15;122(1):33-43. doi: 10.1016/j.cell.2005.05.008. Cell. 2005. PMID: 16009131 Free article.

4

Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription.

Swinburne IA, Meyer CA, Liu XS, Silver PA, Brodsky AS. Swinburne IA, et al. Among authors: liu xs. Genome Res. 2006 Jul;16(7):912-21. doi: 10.1101/gr.5211806. Epub 2006 Jun 12. Genome Res. 2006. PMID: 16769980 Free PMC article.

5

Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species.

Zhang Y, Liu XS, Liu QR, Wei L. Zhang Y, et al. Among authors: liu qr, liu xs. Nucleic Acids Res. 2006 Jul 18;34(12):3465-75. doi: 10.1093/nar/gkl473. Print 2006. Nucleic Acids Res. 2006. PMID: 16849434 Free PMC article.

6

Model-based analysis of tiling-arrays for ChIP-chip.

Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Johnson WE, et al. Among authors: liu xs. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12457-62. doi: 10.1073/pnas.0601180103. Epub 2006 Aug 8. Proc Natl Acad Sci U S A. 2006. PMID: 16895995 Free PMC article.

7

Genome-wide analysis of estrogen receptor binding sites.

Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF, Wang Q, Bekiranov S, Sementchenko V, Fox EA, Silver PA, Gingeras TR, Liu XS, Brown M. Carroll JS, et al. Among authors: liu xs. Nat Genet. 2006 Nov;38(11):1289-97. doi: 10.1038/ng1901. Epub 2006 Oct 1. Nat Genet. 2006. PMID: 17013392

8

A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth.

Wang Q, Li W, Liu XS, Carroll JS, Jänne OA, Keeton EK, Chinnaiyan AM, Pienta KJ, Brown M. Wang Q, et al. Among authors: liu xs. Mol Cell. 2007 Aug 3;27(3):380-92. doi: 10.1016/j.molcel.2007.05.041. Mol Cell. 2007. PMID: 17679089 Free PMC article.

9

Model-based analysis of two-color arrays (MA2C).

Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS. Song JS, et al. Among authors: liu js, liu xs. Genome Biol. 2007;8(8):R178. doi: 10.1186/gb-2007-8-8-r178. Genome Biol. 2007. PMID: 17727723 Free PMC article.

10

Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.

He H, Wang J, Liu T, Liu XS, Li T, Wang Y, Qian Z, Zheng H, Zhu X, Wu T, Shi B, Deng W, Zhou W, Skogerbø G, Chen R. He H, et al. Among authors: liu xs, liu t. Genome Res. 2007 Oct;17(10):1471-7. doi: 10.1101/gr.6611807. Epub 2007 Sep 4. Genome Res. 2007. PMID: 17785534 Free PMC article.

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