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GAGE: A critical evaluation of genome assemblies and assembly algorithms.
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. Salzberg SL, et al. Among authors: treangen tj. Genome Res. 2012 Mar;22(3):557-67. doi: 10.1101/gr.131383.111. Epub 2012 Jan 6. Genome Res. 2012. PMID: 22147368 Free PMC article.
Next generation sequence assembly with AMOS.
Treangen TJ, Sommer DD, Angly FE, Koren S, Pop M. Treangen TJ, et al. Curr Protoc Bioinformatics. 2011 Mar;Chapter 11:Unit 11.8. doi: 10.1002/0471250953.bi1108s33. Curr Protoc Bioinformatics. 2011. PMID: 21400694 Free PMC article.
Bambus 2: scaffolding metagenomes.
Koren S, Treangen TJ, Pop M. Koren S, et al. Among authors: treangen tj. Bioinformatics. 2011 Nov 1;27(21):2964-71. doi: 10.1093/bioinformatics/btr520. Epub 2011 Sep 16. Bioinformatics. 2011. PMID: 21926123 Free PMC article.
Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis.
Harrington R, Ondov BD, Radune D, Friss MB, Klubnik J, Diviak L, Hnath J, Cendrowski SR, Blank TE, Karaolis D, Friedlander AM, Burans JP, Rosovitz MJ, Treangen T, Phillippy AM, Bergman NH. Harrington R, et al. Genome Announc. 2013 Jan;1(1):e00067-12. doi: 10.1128/genomeA.00067-12. Epub 2013 Jan 15. Genome Announc. 2013. PMID: 23405332 Free PMC article.
Automated ensemble assembly and validation of microbial genomes.
Koren S, Treangen TJ, Hill CM, Pop M, Phillippy AM. Koren S, et al. Among authors: treangen tj. BMC Bioinformatics. 2014 May 3;15:126. doi: 10.1186/1471-2105-15-126. BMC Bioinformatics. 2014. PMID: 24884846 Free PMC article.
94 results