Dopazo J - Search Results

1

Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient.

Heyn H, Vidal E, Sayols S, Sanchez-Mut JV, Moran S, Medina I, Sandoval J, Simó-Riudalbas L, Szczesna K, Huertas D, Gatto S, Matarazzo MR, Dopazo J, Esteller M. Heyn H, et al. Among authors: dopazo j. Epigenetics. 2012 Jun 1;7(6):542-50. doi: 10.4161/epi.20523. Epub 2012 Jun 1. Epigenetics. 2012. PMID: 22595875 Free PMC article.

2

A predictor based on the somatic genomic changes of the BRCA1/BRCA2 breast cancer tumors identifies the non-BRCA1/BRCA2 tumors with BRCA1 promoter hypermethylation.

Alvarez S, Diaz-Uriarte R, Osorio A, Barroso A, Melchor L, Paz MF, Honrado E, Rodríguez R, Urioste M, Valle L, Díez O, Cigudosa JC, Dopazo J, Esteller M, Benitez J. Alvarez S, et al. Among authors: dopazo j. Clin Cancer Res. 2005 Feb 1;11(3):1146-53. Clin Cancer Res. 2005. PMID: 15709182

3

Prophet, a web-based tool for class prediction using microarray data.

Medina I, Montaner D, Tárraga J, Dopazo J. Medina I, et al. Among authors: dopazo j. Bioinformatics. 2007 Feb 1;23(3):390-1. doi: 10.1093/bioinformatics/btl602. Epub 2006 Nov 30. Bioinformatics. 2007. PMID: 17138587

4

Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes.

Bonifaci N, Berenguer A, Díez J, Reina O, Medina I, Dopazo J, Moreno V, Pujana MA. Bonifaci N, et al. Among authors: dopazo j. BMC Med Genomics. 2008 Dec 18;1:62. doi: 10.1186/1755-8794-1-62. BMC Med Genomics. 2008. PMID: 19094230 Free PMC article.

5

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies.

Medina I, Montaner D, Bonifaci N, Pujana MA, Carbonell J, Tarraga J, Al-Shahrour F, Dopazo J. Medina I, et al. Among authors: dopazo j. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W340-4. doi: 10.1093/nar/gkp481. Epub 2009 Jun 5. Nucleic Acids Res. 2009. PMID: 19502494 Free PMC article.

6

Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus.

Javierre BM, Fernandez AF, Richter J, Al-Shahrour F, Martin-Subero JI, Rodriguez-Ubreva J, Berdasco M, Fraga MF, O'Hanlon TP, Rider LG, Jacinto FV, Lopez-Longo FJ, Dopazo J, Forn M, Peinado MA, Carreño L, Sawalha AH, Harley JB, Siebert R, Esteller M, Miller FW, Ballestar E. Javierre BM, et al. Among authors: dopazo j. Genome Res. 2010 Feb;20(2):170-9. doi: 10.1101/gr.100289.109. Epub 2009 Dec 22. Genome Res. 2010. PMID: 20028698 Free PMC article.

7

Initial genomics of the human nucleolus.

Németh A, Conesa A, Santoyo-Lopez J, Medina I, Montaner D, Péterfia B, Solovei I, Cremer T, Dopazo J, Längst G. Németh A, et al. Among authors: dopazo j. PLoS Genet. 2010 Mar 26;6(3):e1000889. doi: 10.1371/journal.pgen.1000889. PLoS Genet. 2010. PMID: 20361057 Free PMC article.

8

Serial Expression Analysis: a web tool for the analysis of serial gene expression data.

Nueda MJ, Carbonell J, Medina I, Dopazo J, Conesa A. Nueda MJ, et al. Among authors: dopazo j. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W239-45. doi: 10.1093/nar/gkq488. Epub 2010 Jun 4. Nucleic Acids Res. 2010. PMID: 20525784 Free PMC article.

9

Inferring the regulatory network behind a gene expression experiment.

Bleda M, Medina I, Alonso R, De Maria A, Salavert F, Dopazo J. Bleda M, et al. Among authors: dopazo j. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W168-72. doi: 10.1093/nar/gks573. Epub 2012 Jun 11. Nucleic Acids Res. 2012. PMID: 22693210 Free PMC article.

10

VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing.

Medina I, De Maria A, Bleda M, Salavert F, Alonso R, Gonzalez CY, Dopazo J. Medina I, et al. Among authors: dopazo j. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W54-8. doi: 10.1093/nar/gks572. Epub 2012 Jun 11. Nucleic Acids Res. 2012. PMID: 22693211 Free PMC article.

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