Simonds EF - Search Results

1

CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data.

Linderman MD, Bjornson Z, Simonds EF, Qiu P, Bruggner RV, Sheode K, Meng TH, Plevritis SK, Nolan GP. Linderman MD, et al. Among authors: simonds ef. Bioinformatics. 2012 Sep 15;28(18):2400-1. doi: 10.1093/bioinformatics/bts425. Epub 2012 Jul 10. Bioinformatics. 2012. PMID: 22782546 Free PMC article.

2

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE.

Qiu P, Simonds EF, Bendall SC, Gibbs KD Jr, Bruggner RV, Linderman MD, Sachs K, Nolan GP, Plevritis SK. Qiu P, et al. Among authors: simonds ef. Nat Biotechnol. 2011 Oct 2;29(10):886-91. doi: 10.1038/nbt.1991. Nat Biotechnol. 2011. PMID: 21964415 Free PMC article.

3

GateFinder: projection-based gating strategy optimization for flow and mass cytometry.

Aghaeepour N, Simonds EF, Knapp DJHF, Bruggner RV, Sachs K, Culos A, Gherardini PF, Samusik N, Fragiadakis GK, Bendall SC, Gaudilliere B, Angst MS, Eaves CJ, Weiss WA, Fantl WJ, Nolan GP. Aghaeepour N, et al. Among authors: simonds ef. Bioinformatics. 2018 Dec 1;34(23):4131-4133. doi: 10.1093/bioinformatics/bty430. Bioinformatics. 2018. PMID: 29850785 Free PMC article.

4

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.

Bendall SC, Simonds EF, Qiu P, Amir el-AD, Krutzik PO, Finck R, Bruggner RV, Melamed R, Trejo A, Ornatsky OI, Balderas RS, Plevritis SK, Sachs K, Pe'er D, Tanner SD, Nolan GP. Bendall SC, et al. Among authors: simonds ef. Science. 2011 May 6;332(6030):687-96. doi: 10.1126/science.1198704. Science. 2011. PMID: 21551058 Free PMC article.

5

Normalization of mass cytometry data with bead standards.

Finck R, Simonds EF, Jager A, Krishnaswamy S, Sachs K, Fantl W, Pe'er D, Nolan GP, Bendall SC. Finck R, et al. Among authors: simonds ef. Cytometry A. 2013 May;83(5):483-94. doi: 10.1002/cyto.a.22271. Epub 2013 Mar 19. Cytometry A. 2013. PMID: 23512433 Free PMC article.

6

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators.

Bodenmiller B, Zunder ER, Finck R, Chen TJ, Savig ES, Bruggner RV, Simonds EF, Bendall SC, Sachs K, Krutzik PO, Nolan GP. Bodenmiller B, et al. Among authors: simonds ef. Nat Biotechnol. 2012 Sep;30(9):858-67. doi: 10.1038/nbt.2317. Nat Biotechnol. 2012. PMID: 22902532 Free PMC article.

7

A platinum-based covalent viability reagent for single-cell mass cytometry.

Fienberg HG, Simonds EF, Fantl WJ, Nolan GP, Bodenmiller B. Fienberg HG, et al. Among authors: simonds ef. Cytometry A. 2012 Jun;81(6):467-75. doi: 10.1002/cyto.a.22067. Epub 2012 May 10. Cytometry A. 2012. PMID: 22577098 Free PMC article.

8

Scalable Conjugation and Characterization of Immunoglobulins with Stable Mass Isotope Reporters for Single-Cell Mass Cytometry Analysis.

Hartmann FJ, Simonds EF, Vivanco N, Bruce T, Borges L, Nolan GP, Spitzer MH, Bendall SC. Hartmann FJ, et al. Among authors: simonds ef. Methods Mol Biol. 2019;1989:55-81. doi: 10.1007/978-1-4939-9454-0_5. Methods Mol Biol. 2019. PMID: 31077099 Free PMC article.

9

Single-cell profiling identifies aberrant STAT5 activation in myeloid malignancies with specific clinical and biologic correlates.

Kotecha N, Flores NJ, Irish JM, Simonds EF, Sakai DS, Archambeault S, Diaz-Flores E, Coram M, Shannon KM, Nolan GP, Loh ML. Kotecha N, et al. Among authors: simonds ef. Cancer Cell. 2008 Oct 7;14(4):335-43. doi: 10.1016/j.ccr.2008.08.014. Cancer Cell. 2008. PMID: 18835035 Free PMC article.

10

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.

Bendall SC, Davis KL, Amir el-AD, Tadmor MD, Simonds EF, Chen TJ, Shenfeld DK, Nolan GP, Pe'er D. Bendall SC, et al. Among authors: simonds ef. Cell. 2014 Apr 24;157(3):714-25. doi: 10.1016/j.cell.2014.04.005. Cell. 2014. PMID: 24766814 Free PMC article.

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