Shimamura T - Search Results

1

Epidermal growth factor receptor tyrosine kinase defines critical prognostic genes of stage I lung adenocarcinoma.

Yamauchi M, Yamaguchi R, Nakata A, Kohno T, Nagasaki M, Shimamura T, Imoto S, Saito A, Ueno K, Hatanaka Y, Yoshida R, Higuchi T, Nomura M, Beer DG, Yokota J, Miyano S, Gotoh N. Yamauchi M, et al. Among authors: shimamura t. PLoS One. 2012;7(9):e43923. doi: 10.1371/journal.pone.0043923. Epub 2012 Sep 19. PLoS One. 2012. PMID: 23028479 Free PMC article.

2

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

Shimamura T, Imoto S, Yamaguchi R, Miyano S. Shimamura T, et al. Genome Inform. 2007;19:142-53. Genome Inform. 2007. PMID: 18546512

3

Recursive regularization for inferring gene networks from time-course gene expression profiles.

Shimamura T, Imoto S, Yamaguchi R, Fujita A, Nagasaki M, Miyano S. Shimamura T, et al. BMC Syst Biol. 2009 Apr 22;3:41. doi: 10.1186/1752-0509-3-41. BMC Syst Biol. 2009. PMID: 19386091 Free PMC article.

4

Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data.

Kojima K, Fujita A, Shimamura T, Imoto S, Miyano S. Kojima K, et al. Among authors: shimamura t. Genome Inform. 2008;20:37-51. Genome Inform. 2008. PMID: 19425121 Free article.

5

A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human.

Hatanaka Y, Nagasaki M, Yamaguchi R, Obayashi T, Numata K, Fujita A, Shimamura T, Tamada Y, Imoto S, Kinoshita K, Nakai K, Miyano S. Hatanaka Y, et al. Among authors: shimamura t. Genome Inform. 2008;20:212-21. Genome Inform. 2008. PMID: 19425135 Free article.

6

Predicting differences in gene regulatory systems by state space models.

Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Hatanaka Y, Ueno K, Higuchi T, Gotoh N, Miyano S. Yamaguchi R, et al. Among authors: shimamura t. Genome Inform. 2008;21:101-13. Genome Inform. 2008. PMID: 19425151 Free article.

7

Inferring dynamic gene networks under varying conditions for transcriptomic network comparison.

Shimamura T, Imoto S, Yamaguchi R, Nagasaki M, Miyano S. Shimamura T, et al. Bioinformatics. 2010 Apr 15;26(8):1064-72. doi: 10.1093/bioinformatics/btq080. Epub 2010 Mar 1. Bioinformatics. 2010. PMID: 20197286

8

A state space representation of VAR models with sparse learning for dynamic gene networks.

Kojima K, Yamaguchi R, Imoto S, Yamauchi M, Nagasaki M, Yoshida R, Shimamura T, Ueno K, Higuchi T, Gotoh N, Miyano S. Kojima K, et al. Among authors: shimamura t. Genome Inform. 2010 Jan;22:56-68. Genome Inform. 2010. PMID: 20238419

9

Inferring contagion in regulatory networks.

Fujita A, Sato JR, Angelo M, Demasi A, Yamaguchi R, Shimamura T, Ferreira CE, Sogayar MC, Miyano S. Fujita A, et al. Among authors: shimamura t. IEEE/ACM Trans Comput Biol Bioinform. 2011 Mar-Apr;8(2):570-76. doi: 10.1109/TCBB.2010.40. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 20479499

10

Model-free unsupervised gene set screening based on information enrichment in expression profiles.

Niida A, Imoto S, Yamaguchi R, Nagasaki M, Fujita A, Shimamura T, Miyano S. Niida A, et al. Among authors: shimamura t. Bioinformatics. 2010 Dec 15;26(24):3090-7. doi: 10.1093/bioinformatics/btq592. Epub 2010 Oct 19. Bioinformatics. 2010. PMID: 20959379

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