Bork P - Search Results

1

DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data.

Pacini C, Iorio F, Gonçalves E, Iskar M, Klabunde T, Bork P, Saez-Rodriguez J. Pacini C, et al. Among authors: bork p. Bioinformatics. 2013 Jan 1;29(1):132-4. doi: 10.1093/bioinformatics/bts656. Epub 2012 Nov 4. Bioinformatics. 2013. PMID: 23129297 Free PMC article.

2

Frame: detection of genomic sequencing errors.

Brown NP, Sander C, Bork P. Brown NP, et al. Among authors: bork p. Bioinformatics. 1998;14(4):367-71. doi: 10.1093/bioinformatics/14.4.367. Bioinformatics. 1998. PMID: 9632832

3

AQUA: automated quality improvement for multiple sequence alignments.

Muller J, Creevey CJ, Thompson JD, Arendt D, Bork P. Muller J, et al. Among authors: bork p. Bioinformatics. 2010 Jan 15;26(2):263-5. doi: 10.1093/bioinformatics/btp651. Epub 2009 Nov 19. Bioinformatics. 2010. PMID: 19926669

4

Drug-induced regulation of target expression.

Iskar M, Campillos M, Kuhn M, Jensen LJ, van Noort V, Bork P. Iskar M, et al. Among authors: bork p. PLoS Comput Biol. 2010 Sep 9;6(9):e1000925. doi: 10.1371/journal.pcbi.1000925. PLoS Comput Biol. 2010. PMID: 20838579 Free PMC article.

5

SmashCommunity: a metagenomic annotation and analysis tool.

Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P. Arumugam M, et al. Among authors: bork p. Bioinformatics. 2010 Dec 1;26(23):2977-8. doi: 10.1093/bioinformatics/btq536. Epub 2010 Oct 19. Bioinformatics. 2010. PMID: 20959381

6

Network neighbors of drug targets contribute to drug side-effect similarity.

Brouwers L, Iskar M, Zeller G, van Noort V, Bork P. Brouwers L, et al. Among authors: bork p. PLoS One. 2011;6(7):e22187. doi: 10.1371/journal.pone.0022187. Epub 2011 Jul 13. PLoS One. 2011. PMID: 21765950 Free PMC article.

7

Drug discovery in the age of systems biology: the rise of computational approaches for data integration.

Iskar M, Zeller G, Zhao XM, van Noort V, Bork P. Iskar M, et al. Among authors: bork p. Curr Opin Biotechnol. 2012 Aug;23(4):609-16. doi: 10.1016/j.copbio.2011.11.010. Epub 2011 Dec 5. Curr Opin Biotechnol. 2012. PMID: 22153034 Review.

8

Prediction of drug combinations by integrating molecular and pharmacological data.

Zhao XM, Iskar M, Zeller G, Kuhn M, van Noort V, Bork P. Zhao XM, et al. Among authors: bork p. PLoS Comput Biol. 2011 Dec;7(12):e1002323. doi: 10.1371/journal.pcbi.1002323. Epub 2011 Dec 29. PLoS Comput Biol. 2011. PMID: 22219721 Free PMC article.

9

Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines.

Ori A, Banterle N, Iskar M, Andrés-Pons A, Escher C, Khanh Bui H, Sparks L, Solis-Mezarino V, Rinner O, Bork P, Lemke EA, Beck M. Ori A, et al. Among authors: bork p. Mol Syst Biol. 2013;9:648. doi: 10.1038/msb.2013.4. Mol Syst Biol. 2013. PMID: 23511206 Free PMC article.

10

Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding.

Iskar M, Zeller G, Blattmann P, Campillos M, Kuhn M, Kaminska KH, Runz H, Gavin AC, Pepperkok R, van Noort V, Bork P. Iskar M, et al. Among authors: bork p. Mol Syst Biol. 2013;9:662. doi: 10.1038/msb.2013.20. Mol Syst Biol. 2013. PMID: 23632384 Free PMC article.

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