Saez-Rodriguez J - Search Results

1

Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models.

Gonçalves E, Bucher J, Ryll A, Niklas J, Mauch K, Klamt S, Rocha M, Saez-Rodriguez J. Gonçalves E, et al. Mol Biosyst. 2013 Jul;9(7):1576-83. doi: 10.1039/c3mb25489e. Epub 2013 Mar 25. Mol Biosyst. 2013. PMID: 23525368 Review.

2

A methodology for the structural and functional analysis of signaling and regulatory networks.

Klamt S, Saez-Rodriguez J, Lindquist JA, Simeoni L, Gilles ED. Klamt S, et al. BMC Bioinformatics. 2006 Feb 7;7:56. doi: 10.1186/1471-2105-7-56. BMC Bioinformatics. 2006. PMID: 16464248 Free PMC article.

3

Visual setup of logical models of signaling and regulatory networks with ProMoT.

Saez-Rodriguez J, Mirschel S, Hemenway R, Klamt S, Gilles ED, Ginkel M. Saez-Rodriguez J, et al. BMC Bioinformatics. 2006 Nov 17;7:506. doi: 10.1186/1471-2105-7-506. BMC Bioinformatics. 2006. PMID: 17109765 Free PMC article.

4

Structural and functional analysis of cellular networks with CellNetAnalyzer.

Klamt S, Saez-Rodriguez J, Gilles ED. Klamt S, et al. BMC Syst Biol. 2007 Jan 8;1:2. doi: 10.1186/1752-0509-1-2. BMC Syst Biol. 2007. PMID: 17408509 Free PMC article.

5

Multistability of signal transduction motifs.

Saez-Rodriguez J, Hammerle-Fickinger A, Dalal O, Klamt S, Gilles ED, Conradi C. Saez-Rodriguez J, et al. IET Syst Biol. 2008 Mar;2(2):80-93. doi: 10.1049/iet-syb:20070012. IET Syst Biol. 2008. PMID: 18397119 Free article.

6

The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data.

Samaga R, Saez-Rodriguez J, Alexopoulos LG, Sorger PK, Klamt S. Samaga R, et al. PLoS Comput Biol. 2009 Aug;5(8):e1000438. doi: 10.1371/journal.pcbi.1000438. Epub 2009 Aug 7. PLoS Comput Biol. 2009. PMID: 19662154 Free PMC article.

7

Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling.

Wittmann DM, Krumsiek J, Saez-Rodriguez J, Lauffenburger DA, Klamt S, Theis FJ. Wittmann DM, et al. BMC Syst Biol. 2009 Sep 28;3:98. doi: 10.1186/1752-0509-3-98. BMC Syst Biol. 2009. PMID: 19785753 Free PMC article.

8

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction.

Saez-Rodriguez J, Alexopoulos LG, Epperlein J, Samaga R, Lauffenburger DA, Klamt S, Sorger PK. Saez-Rodriguez J, et al. Mol Syst Biol. 2009;5:331. doi: 10.1038/msb.2009.87. Epub 2009 Dec 1. Mol Syst Biol. 2009. PMID: 19953085 Free PMC article.

9

Setting the standards for signal transduction research.

Saez-Rodriguez J, Alexopoulos LG, Stolovitzky G. Saez-Rodriguez J, et al. Sci Signal. 2011 Feb 15;4(160):pe10. doi: 10.1126/scisignal.2001844. Sci Signal. 2011. PMID: 21325202

10

Modeling signaling networks using high-throughput phospho-proteomics.

Terfve C, Saez-Rodriguez J. Terfve C, et al. Adv Exp Med Biol. 2012;736:19-57. doi: 10.1007/978-1-4419-7210-1_2. Adv Exp Med Biol. 2012. PMID: 22161321 Review.

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