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High-resolution comparative modeling with RosettaCM.
Song Y, DiMaio F, Wang RY, Kim D, Miles C, Brunette T, Thompson J, Baker D. Song Y, et al. Among authors: dimaio f. Structure. 2013 Oct 8;21(10):1735-42. doi: 10.1016/j.str.2013.08.005. Epub 2013 Sep 12. Structure. 2013. PMID: 24035711 Free PMC article.
Structure prediction for CASP8 with all-atom refinement using Rosetta.
Raman S, Vernon R, Thompson J, Tyka M, Sadreyev R, Pei J, Kim D, Kellogg E, DiMaio F, Lange O, Kinch L, Sheffler W, Kim BH, Das R, Grishin NV, Baker D. Raman S, et al. Among authors: dimaio f. Proteins. 2009;77 Suppl 9(0 9):89-99. doi: 10.1002/prot.22540. Proteins. 2009. PMID: 19701941 Free PMC article.
Alternate states of proteins revealed by detailed energy landscape mapping.
Tyka MD, Keedy DA, André I, Dimaio F, Song Y, Richardson DC, Richardson JS, Baker D. Tyka MD, et al. Among authors: dimaio f. J Mol Biol. 2011 Jan 14;405(2):607-18. doi: 10.1016/j.jmb.2010.11.008. Epub 2010 Nov 10. J Mol Biol. 2011. PMID: 21073878 Free PMC article.
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus.
Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W. Chen DH, et al. Among authors: dimaio f. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1355-60. doi: 10.1073/pnas.1015739108. Epub 2011 Jan 10. Proc Natl Acad Sci U S A. 2011. PMID: 21220301 Free PMC article.
Modeling symmetric macromolecular structures in Rosetta3.
DiMaio F, Leaver-Fay A, Bradley P, Baker D, André I. DiMaio F, et al. PLoS One. 2011;6(6):e20450. doi: 10.1371/journal.pone.0020450. Epub 2011 Jun 22. PLoS One. 2011. PMID: 21731614 Free PMC article.
Crystal structure of a monomeric retroviral protease solved by protein folding game players.
Khatib F, DiMaio F; Foldit Contenders Group; Foldit Void Crushers Group; Cooper S, Kazmierczyk M, Gilski M, Krzywda S, Zabranska H, Pichova I, Thompson J, Popović Z, Jaskolski M, Baker D. Khatib F, et al. Among authors: dimaio f. Nat Struct Mol Biol. 2011 Sep 18;18(10):1175-7. doi: 10.1038/nsmb.2119. Nat Struct Mol Biol. 2011. PMID: 21926992 Free PMC article.
168 results