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Advancing our understanding of the human microbiome using QIIME.
Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R. Navas-Molina JA, et al. Among authors: gonzalez a. Methods Enzymol. 2013;531:371-444. doi: 10.1016/B978-0-12-407863-5.00019-8. Methods Enzymol. 2013. PMID: 24060131 Free PMC article.
The mind-body-microbial continuum.
Gonzalez A, Stombaugh J, Lozupone C, Turnbaugh PJ, Gordon JI, Knight R. Gonzalez A, et al. Dialogues Clin Neurosci. 2011;13(1):55-62. doi: 10.31887/DCNS.2011.13.1/agonzalez. Dialogues Clin Neurosci. 2011. PMID: 21485746 Free PMC article.
Moving pictures of the human microbiome.
Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R. Caporaso JG, et al. Among authors: gonzalez a. Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50. Genome Biol. 2011. PMID: 21624126 Free PMC article.
Our microbial selves: what ecology can teach us.
Gonzalez A, Clemente JC, Shade A, Metcalf JL, Song S, Prithiviraj B, Palmer BE, Knight R. Gonzalez A, et al. EMBO Rep. 2011 Jul 1;12(8):775-84. doi: 10.1038/embor.2011.137. EMBO Rep. 2011. PMID: 21720391 Free PMC article. Review.
Characterizing microbial communities through space and time.
Gonzalez A, King A, Robeson MS 2nd, Song S, Shade A, Metcalf JL, Knight R. Gonzalez A, et al. Curr Opin Biotechnol. 2012 Jun;23(3):431-6. doi: 10.1016/j.copbio.2011.11.017. Epub 2011 Dec 7. Curr Opin Biotechnol. 2012. PMID: 22154467 Free PMC article. Review.
Using QIIME to analyze 16S rRNA gene sequences from microbial communities.
Kuczynski J, Stombaugh J, Walters WA, González A, Caporaso JG, Knight R. Kuczynski J, et al. Among authors: gonzalez a. Curr Protoc Bioinformatics. 2011 Dec;Chapter 10:10.7.1-10.7.20. doi: 10.1002/0471250953.bi1007s36. Curr Protoc Bioinformatics. 2011. PMID: 22161565 Free PMC article.
SitePainter: a tool for exploring biogeographical patterns.
Gonzalez A, Stombaugh J, Lauber CL, Fierer N, Knight R. Gonzalez A, et al. Bioinformatics. 2012 Feb 1;28(3):436-8. doi: 10.1093/bioinformatics/btr685. Epub 2011 Dec 9. Bioinformatics. 2012. PMID: 22171330 Free PMC article.
Collaborative cloud-enabled tools allow rapid, reproducible biological insights.
Ragan-Kelley B, Walters WA, McDonald D, Riley J, Granger BE, Gonzalez A, Knight R, Perez F, Caporaso JG. Ragan-Kelley B, et al. Among authors: gonzalez a. ISME J. 2013 Mar;7(3):461-4. doi: 10.1038/ismej.2012.123. Epub 2012 Oct 25. ISME J. 2013. PMID: 23096404 Free PMC article. No abstract available.
Using QIIME to analyze 16S rRNA gene sequences from microbial communities.
Kuczynski J, Stombaugh J, Walters WA, González A, Caporaso JG, Knight R. Kuczynski J, et al. Among authors: gonzalez a. Curr Protoc Microbiol. 2012 Nov;Chapter 1:Unit 1E.5.. doi: 10.1002/9780471729259.mc01e05s27. Curr Protoc Microbiol. 2012. PMID: 23184592 Free PMC article.
7,328 results