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The MG-RAST metagenomics database and portal in 2015.
Wilke A, Bischof J, Gerlach W, Glass E, Harrison T, Keegan KP, Paczian T, Trimble WL, Bagchi S, Grama A, Chaterji S, Meyer F. Wilke A, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D590-4. doi: 10.1093/nar/gkv1322. Epub 2015 Dec 9. Nucleic Acids Res. 2016. PMID: 26656948 Free PMC article.
Metazen - metadata capture for metagenomes.
Bischof J, Harrison T, Paczian T, Glass E, Wilke A, Meyer F. Bischof J, et al. Stand Genomic Sci. 2014 Dec 8;9:18. doi: 10.1186/1944-3277-9-18. eCollection 2014. Stand Genomic Sci. 2014. PMID: 25780508 Free PMC article.
A metagenomics portal for a democratized sequencing world.
Wilke A, Glass EM, Bartels D, Bischof J, Braithwaite D, D'Souza M, Gerlach W, Harrison T, Keegan K, Matthews H, Kottmann R, Paczian T, Tang W, Trimble WL, Yilmaz P, Wilkening J, Desai N, Meyer F. Wilke A, et al. Among authors: glass em. Methods Enzymol. 2013;531:487-523. doi: 10.1016/B978-0-12-407863-5.00022-8. Methods Enzymol. 2013. PMID: 24060134
The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome.
Handley KM, Bartels D, O'Loughlin EJ, Williams KH, Trimble WL, Skinner K, Gilbert JA, Desai N, Glass EM, Paczian T, Wilke A, Antonopoulos D, Kemner KM, Meyer F. Handley KM, et al. Among authors: glass em. Environ Microbiol. 2014 Nov;16(11):3443-62. doi: 10.1111/1462-2920.12453. Epub 2014 Apr 21. Environ Microbiol. 2014. PMID: 24628880
From genomics to metagenomics.
Desai N, Antonopoulos D, Gilbert JA, Glass EM, Meyer F. Desai N, et al. Among authors: glass em. Curr Opin Biotechnol. 2012 Feb;23(1):72-6. doi: 10.1016/j.copbio.2011.12.017. Epub 2012 Jan 5. Curr Opin Biotechnol. 2012. PMID: 22227326 Review.
A RESTful API for accessing microbial community data for MG-RAST.
Wilke A, Bischof J, Harrison T, Brettin T, D'Souza M, Gerlach W, Matthews H, Paczian T, Wilkening J, Glass EM, Desai N, Meyer F. Wilke A, et al. Among authors: glass em. PLoS Comput Biol. 2015 Jan 8;11(1):e1004008. doi: 10.1371/journal.pcbi.1004008. eCollection 2015 Jan. PLoS Comput Biol. 2015. PMID: 25569221 Free PMC article.
42 results