Zych K - Search Results

1

WormQTLHD--a web database for linking human disease to natural variation data in C. elegans.

van der Velde KJ, de Haan M, Zych K, Arends D, Snoek LB, Kammenga JE, Jansen RC, Swertz MA, Li Y. van der Velde KJ, et al. Among authors: zych k. Nucleic Acids Res. 2014 Jan;42(Database issue):D794-801. doi: 10.1093/nar/gkt1044. Epub 2013 Nov 11. Nucleic Acids Res. 2014. PMID: 24217915 Free PMC article.

2

reGenotyper: Detecting mislabeled samples in genetic data.

Zych K, Snoek BL, Elvin M, Rodriguez M, Van der Velde KJ, Arends D, Westra HJ, Swertz MA, Poulin G, Kammenga JE, Breitling R, Jansen RC, Li Y. Zych K, et al. PLoS One. 2017 Feb 13;12(2):e0171324. doi: 10.1371/journal.pone.0171324. eCollection 2017. PLoS One. 2017. PMID: 28192439 Free PMC article.

3

Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains.

Zych K, Li Y, van der Velde JK, Joosen RV, Ligterink W, Jansen RC, Arends D. Zych K, et al. BMC Bioinformatics. 2015 Feb 19;16(1):51. doi: 10.1186/s12859-015-0475-6. BMC Bioinformatics. 2015. PMID: 25886992 Free PMC article.

4

FitTetra 2.0 - improved genotype calling for tetraploids with multiple population and parental data support.

Zych K, Gort G, Maliepaard CA, Jansen RC, Voorrips RE. Zych K, et al. BMC Bioinformatics. 2019 Mar 20;20(1):148. doi: 10.1186/s12859-019-2703-y. BMC Bioinformatics. 2019. PMID: 30894135 Free PMC article.

5

Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters.

Del Carratore F, Zych K, Cummings M, Takano E, Medema MH, Breitling R. Del Carratore F, et al. Among authors: zych k. Commun Biol. 2019 Feb 28;2:83. doi: 10.1038/s42003-019-0333-6. eCollection 2019. Commun Biol. 2019. PMID: 30854475 Free PMC article.

6

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox.

Wirbel J, Zych K, Essex M, Karcher N, Kartal E, Salazar G, Bork P, Sunagawa S, Zeller G. Wirbel J, et al. Among authors: zych k. Genome Biol. 2021 Mar 30;22(1):93. doi: 10.1186/s13059-021-02306-1. Genome Biol. 2021. PMID: 33785070 Free PMC article.

7

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.

Wirbel J, Pyl PT, Kartal E, Zych K, Kashani A, Milanese A, Fleck JS, Voigt AY, Palleja A, Ponnudurai R, Sunagawa S, Coelho LP, Schrotz-King P, Vogtmann E, Habermann N, Niméus E, Thomas AM, Manghi P, Gandini S, Serrano D, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Waldron L, Naccarati A, Segata N, Sinha R, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G. Wirbel J, et al. Among authors: zych k. Nat Med. 2019 Apr;25(4):679-689. doi: 10.1038/s41591-019-0406-6. Epub 2019 Apr 1. Nat Med. 2019. PMID: 30936547 Free PMC article.

8

A faecal microbiota signature with high specificity for pancreatic cancer.

Kartal E, Schmidt TSB, Molina-Montes E, Rodríguez-Perales S, Wirbel J, Maistrenko OM, Akanni WA, Alashkar Alhamwe B, Alves RJ, Carrato A, Erasmus HP, Estudillo L, Finkelmeier F, Fullam A, Glazek AM, Gómez-Rubio P, Hercog R, Jung F, Kandels S, Kersting S, Langheinrich M, Márquez M, Molero X, Orakov A, Van Rossum T, Torres-Ruiz R, Telzerow A, Zych K; MAGIC Study investigators; PanGenEU Study investigators; Benes V, Zeller G, Trebicka J, Real FX, Malats N, Bork P. Kartal E, et al. Among authors: zych k. Gut. 2022 Jul;71(7):1359-1372. doi: 10.1136/gutjnl-2021-324755. Epub 2022 Mar 8. Gut. 2022. PMID: 35260444 Free PMC article.

9

Machine learning on the road to unlocking microbiota's potential for boosting immune checkpoint therapy.

Wojciechowski S, Majchrzak-Górecka M, Biernat P, Odrzywołek K, Pruss Ł, Zych K, Jan Majta, Milanowska-Zabel K. Wojciechowski S, et al. Among authors: zych k. Int J Med Microbiol. 2022 Oct;312(7):151560. doi: 10.1016/j.ijmm.2022.151560. Epub 2022 Sep 9. Int J Med Microbiol. 2022. PMID: 36113358 Free article. Review.

10

Advanced Dental Cleaning is Associated with Reduced Risk of COPD Exacerbations - A Randomized Controlled Trial.

Sundh J, Tanash H, Arian R, Neves-Guimaraes A, Broberg K, Lindved G, Kern T, Zych K, Nielsen HB, Halling A, Ohlsson B, Jönsson D. Sundh J, et al. Among authors: zych k. Int J Chron Obstruct Pulmon Dis. 2021 Nov 25;16:3203-3215. doi: 10.2147/COPD.S327036. eCollection 2021. Int J Chron Obstruct Pulmon Dis. 2021. PMID: 34858021 Free PMC article. Clinical Trial.

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