Sheong FK - Search Results

1

Application of Markov State Models to simulate long timescale dynamics of biological macromolecules.

Da LT, Sheong FK, Silva DA, Huang X. Da LT, et al. Among authors: sheong fk. Adv Exp Med Biol. 2014;805:29-66. doi: 10.1007/978-3-319-02970-2_2. Adv Exp Med Biol. 2014. PMID: 24446356

2

A fast parallel clustering algorithm for molecular simulation trajectories.

Zhao Y, Sheong FK, Sun J, Sander P, Huang X. Zhao Y, et al. Among authors: sheong fk. J Comput Chem. 2013 Jan 15;34(2):95-104. doi: 10.1002/jcc.23110. Epub 2012 Sep 20. J Comput Chem. 2013. PMID: 22996151

3

Markov State Models Reveal a Two-Step Mechanism of miRNA Loading into the Human Argonaute Protein: Selective Binding followed by Structural Re-arrangement.

Jiang H, Sheong FK, Zhu L, Gao X, Bernauer J, Huang X. Jiang H, et al. Among authors: sheong fk. PLoS Comput Biol. 2015 Jul 16;11(7):e1004404. doi: 10.1371/journal.pcbi.1004404. eCollection 2015 Jul. PLoS Comput Biol. 2015. PMID: 26181723 Free PMC article.

4

Reference interaction site model with hydrophobicity induced density inhomogeneity: An analytical theory to compute solvation properties of large hydrophobic solutes in the mixture of polyatomic solvent molecules.

Cao S, Sheong FK, Huang X. Cao S, et al. Among authors: sheong fk. J Chem Phys. 2015 Aug 7;143(5):054110. doi: 10.1063/1.4928051. J Chem Phys. 2015. PMID: 26254645

5

Automatic state partitioning for multibody systems (APM): an efficient algorithm for constructing Markov state models to elucidate conformational dynamics of multibody systems.

Sheong FK, Silva DA, Meng L, Zhao Y, Huang X. Sheong FK, et al. J Chem Theory Comput. 2015 Jan 13;11(1):17-27. doi: 10.1021/ct5007168. Epub 2014 Dec 23. J Chem Theory Comput. 2015. PMID: 26574199

6

A Flexible Domain-Domain Hinge Promotes an Induced-fit Dominant Mechanism for the Loading of Guide-DNA into Argonaute Protein in Thermus thermophilus.

Zhu L, Jiang H, Sheong FK, Cui X, Gao X, Wang Y, Huang X. Zhu L, et al. Among authors: sheong fk. J Phys Chem B. 2016 Mar 17;120(10):2709-20. doi: 10.1021/acs.jpcb.5b12426. Epub 2016 Mar 4. J Phys Chem B. 2016. PMID: 26908081

7

Elucidation of the conformational dynamics of multi-body systems by construction of Markov state models.

Zhu L, Sheong FK, Zeng X, Huang X. Zhu L, et al. Among authors: sheong fk. Phys Chem Chem Phys. 2016 Nov 9;18(44):30228-30235. doi: 10.1039/c6cp02545e. Phys Chem Chem Phys. 2016. PMID: 27314275

8

Constructing Kinetic Network Models to Elucidate Mechanisms of Functional Conformational Changes of Enzymes and Their Recognition with Ligands.

Zhang L, Jiang H, Sheong FK, Pardo-Avila F, Cheung PP, Huang X. Zhang L, et al. Among authors: sheong fk. Methods Enzymol. 2016;578:343-71. doi: 10.1016/bs.mie.2016.05.026. Epub 2016 Jun 24. Methods Enzymol. 2016. PMID: 27497174 Review.

9

Understanding the core of RNA interference: The dynamic aspects of Argonaute-mediated processes.

Zhu L, Jiang H, Sheong FK, Cui X, Wang Y, Gao X, Huang X. Zhu L, et al. Among authors: sheong fk. Prog Biophys Mol Biol. 2017 Sep;128:39-46. doi: 10.1016/j.pbiomolbio.2016.09.008. Epub 2016 Sep 30. Prog Biophys Mol Biol. 2017. PMID: 27697475 Review.

10

Adaptive partitioning by local density-peaks: An efficient density-based clustering algorithm for analyzing molecular dynamics trajectories.

Liu S, Zhu L, Sheong FK, Wang W, Huang X. Liu S, et al. Among authors: sheong fk. J Comput Chem. 2017 Jan 30;38(3):152-160. doi: 10.1002/jcc.24664. Epub 2016 Nov 21. J Comput Chem. 2017. PMID: 27868222

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