Toni T - Search Results

1

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation.

Liepe J, Kirk P, Filippi S, Toni T, Barnes CP, Stumpf MP. Liepe J, et al. Among authors: toni t. Nat Protoc. 2014 Feb;9(2):439-56. doi: 10.1038/nprot.2014.025. Epub 2014 Jan 23. Nat Protoc. 2014. PMID: 24457334 Free PMC article.

2

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems.

Toni T, Welch D, Strelkowa N, Ipsen A, Stumpf MP. Toni T, et al. J R Soc Interface. 2009 Feb 6;6(31):187-202. doi: 10.1098/rsif.2008.0172. J R Soc Interface. 2009. PMID: 19205079 Free PMC article.

3

The ABC of reverse engineering biological signalling systems.

Secrier M, Toni T, Stumpf MP. Secrier M, et al. Among authors: toni t. Mol Biosyst. 2009 Dec;5(12):1925-35. doi: 10.1039/b908951a. Epub 2009 Sep 24. Mol Biosyst. 2009. PMID: 19798456

4

Simulation-based model selection for dynamical systems in systems and population biology.

Toni T, Stumpf MP. Toni T, et al. Bioinformatics. 2010 Jan 1;26(1):104-10. doi: 10.1093/bioinformatics/btp619. Epub 2009 Oct 29. Bioinformatics. 2010. PMID: 19880371 Free PMC article.

5

ABC-SysBio--approximate Bayesian computation in Python with GPU support.

Liepe J, Barnes C, Cule E, Erguler K, Kirk P, Toni T, Stumpf MP. Liepe J, et al. Among authors: toni t. Bioinformatics. 2010 Jul 15;26(14):1797-9. doi: 10.1093/bioinformatics/btq278. Bioinformatics. 2010. PMID: 20591907 Free PMC article.

6

Parameter inference and model selection in signaling pathway models.

Toni T, Stumpf MP. Toni T, et al. Methods Mol Biol. 2010;673:283-95. doi: 10.1007/978-1-60761-842-3_18. Methods Mol Biol. 2010. PMID: 20835806 Review.

7

Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection.

Toni T, Ozaki Y, Kirk P, Kuroda S, Stumpf MP. Toni T, et al. Mol Biosyst. 2012 Jul 6;8(7):1921-9. doi: 10.1039/c2mb05493k. Epub 2012 May 3. Mol Biosyst. 2012. PMID: 22555461

8

Model selection in systems biology depends on experimental design.

Silk D, Kirk PD, Barnes CP, Toni T, Stumpf MP. Silk D, et al. Among authors: toni t. PLoS Comput Biol. 2014 Jun 12;10(6):e1003650. doi: 10.1371/journal.pcbi.1003650. eCollection 2014 Jun. PLoS Comput Biol. 2014. PMID: 24922483 Free PMC article.

9

Parameter inference for biochemical systems that undergo a Hopf bifurcation.

Kirk PD, Toni T, Stumpf MP. Kirk PD, et al. Among authors: toni t. Biophys J. 2008 Jul;95(2):540-9. doi: 10.1529/biophysj.107.126086. Epub 2008 May 2. Biophys J. 2008. PMID: 18456830 Free PMC article.

10

From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli.

Toni T, Jovanovic G, Huvet M, Buck M, Stumpf MP. Toni T, et al. BMC Syst Biol. 2011 May 12;5:69. doi: 10.1186/1752-0509-5-69. BMC Syst Biol. 2011. PMID: 21569396 Free PMC article.

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