Zheng Y - Search Results

1

Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI.

Horton JR, Nugent RL, Li A, Mabuchi MY, Fomenkov A, Cohen-Karni D, Griggs RM, Zhang X, Wilson GG, Zheng Y, Xu SY, Cheng X. Horton JR, et al. Among authors: zheng y. Sci Rep. 2014 Mar 7;4:4246. doi: 10.1038/srep04246. Sci Rep. 2014. PMID: 24604015 Free PMC article.

2

A unique family of Mrr-like modification-dependent restriction endonucleases.

Zheng Y, Cohen-Karni D, Xu D, Chin HG, Wilson G, Pradhan S, Roberts RJ. Zheng Y, et al. Nucleic Acids Res. 2010 Sep;38(16):5527-34. doi: 10.1093/nar/gkq327. Epub 2010 May 5. Nucleic Acids Res. 2010. PMID: 20444879 Free PMC article.

3

Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.

Horton JR, Mabuchi MY, Cohen-Karni D, Zhang X, Griggs RM, Samaranayake M, Roberts RJ, Zheng Y, Cheng X. Horton JR, et al. Among authors: zheng y. Nucleic Acids Res. 2012 Oct;40(19):9763-73. doi: 10.1093/nar/gks719. Epub 2012 Jul 30. Nucleic Acids Res. 2012. PMID: 22848107 Free PMC article.

4

Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA.

Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X. Horton JR, et al. Among authors: zheng y. Nucleic Acids Res. 2014 Jul;42(12):7947-59. doi: 10.1093/nar/gku497. Epub 2014 Jun 3. Nucleic Acids Res. 2014. PMID: 24895434 Free PMC article.

5

Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix.

Horton JR, Wang H, Mabuchi MY, Zhang X, Roberts RJ, Zheng Y, Wilson GG, Cheng X. Horton JR, et al. Among authors: zheng y. Nucleic Acids Res. 2014 Oct 29;42(19):12092-101. doi: 10.1093/nar/gku871. Epub 2014 Sep 27. Nucleic Acids Res. 2014. PMID: 25262349 Free PMC article.

6

A type IV modification-dependent restriction enzyme SauUSI from Staphylococcus aureus subsp. aureus USA300.

Xu SY, Corvaglia AR, Chan SH, Zheng Y, Linder P. Xu SY, et al. Among authors: zheng y. Nucleic Acids Res. 2011 Jul;39(13):5597-610. doi: 10.1093/nar/gkr098. Epub 2011 Mar 17. Nucleic Acids Res. 2011. PMID: 21421560 Free PMC article.

7

The MspJI family of modification-dependent restriction endonucleases for epigenetic studies.

Cohen-Karni D, Xu D, Apone L, Fomenkov A, Sun Z, Davis PJ, Kinney SR, Yamada-Mabuchi M, Xu SY, Davis T, Pradhan S, Roberts RJ, Zheng Y. Cohen-Karni D, et al. Among authors: zheng y. Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11040-5. doi: 10.1073/pnas.1018448108. Epub 2011 Jun 20. Proc Natl Acad Sci U S A. 2011. PMID: 21690366 Free PMC article.

8

Comparative characterization of the PvuRts1I family of restriction enzymes and their application in mapping genomic 5-hydroxymethylcytosine.

Wang H, Guan S, Quimby A, Cohen-Karni D, Pradhan S, Wilson G, Roberts RJ, Zhu Z, Zheng Y. Wang H, et al. Among authors: zheng y. Nucleic Acids Res. 2011 Nov;39(21):9294-305. doi: 10.1093/nar/gkr607. Epub 2011 Aug 3. Nucleic Acids Res. 2011. PMID: 21813453 Free PMC article.

9

Characterization of type II and III restriction-modification systems from Bacillus cereus strains ATCC 10987 and ATCC 14579.

Xu SY, Nugent RL, Kasamkattil J, Fomenkov A, Gupta Y, Aggarwal A, Wang X, Li Z, Zheng Y, Morgan R. Xu SY, et al. Among authors: zheng y. J Bacteriol. 2012 Jan;194(1):49-60. doi: 10.1128/JB.06248-11. Epub 2011 Oct 28. J Bacteriol. 2012. PMID: 22037402 Free PMC article.

10

Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA.

Hashimoto H, Pais JE, Zhang X, Saleh L, Fu ZQ, Dai N, Corrêa IR Jr, Zheng Y, Cheng X. Hashimoto H, et al. Among authors: zheng y. Nature. 2014 Feb 20;506(7488):391-5. doi: 10.1038/nature12905. Epub 2013 Dec 25. Nature. 2014. PMID: 24390346 Free PMC article.

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